.command.err - Workdir - DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_1;chr4_22420786-22421189.bed)

File Info

Filename: .command.err
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/39/fc9646a44024d081f070ef848fde6d/.command.err
Size: 85.8 KB
Task: DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_1;chr4_22420786-22421189.bed)
Attempt
Content

[2026-06-08T22:19:26.021895Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-08T22:19:26.022990Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-08T22:19:26.023017Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-08T22:19:26.023022Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-08T22:19:26.023027Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXXx6Hdv'
[2026-06-08T22:19:26.023031Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-08T22:19:26.023036Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-08T22:19:26.023039Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-08T22:19:26.023043Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] [RunParameters] memMb: 3096076
[2026-06-08T22:19:26.023047Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-08T22:19:26.023050Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-08T22:19:26.023054Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-08T22:19:26.023057Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-08T22:19:26.023061Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-08T22:19:26.023872Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-08T22:19:26.023939Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-08T22:19:26.029997Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-08T22:19:26.031304Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-08T22:19:26.032027Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-08T22:19:26.032338Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.033660Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-08T22:19:26.034075Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.035094Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.036043Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.036841Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.037194Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.037294Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.037439Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.038299Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.038601Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.038743Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.038977Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.041141Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.042091Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-08T22:19:26.042483Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.042780Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.043064Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.043241Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.043725Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.044286Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.044658Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.044790Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.044981Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.045056Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.045621Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.048965Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.049270Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.049580Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.049772Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.049871Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.050028Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.050135Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.050271Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.050346Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.050484Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.050611Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.050895Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.051495Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.052148Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.052599Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.053127Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.053201Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.053321Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.053395Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.053518Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.053594Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.053795Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.053862Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.053979Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.054045Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.054513Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.054825Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.054939Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.055000Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.055112Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.055176Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.055289Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.055356Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.055465Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.055529Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.055642Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.055709Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.055821Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.055952Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.056643Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.056711Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.056832Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.056892Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.057002Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.057068Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.057176Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.057240Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.057350Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.057413Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.059778Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.060771Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.060947Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.061021Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.061138Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.061206Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.061324Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.061389Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.061506Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.061571Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.061683Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.061752Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.061944Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.062718Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.062840Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.062907Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.063024Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.063089Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.063199Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.063261Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.063373Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.063440Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.082274Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.082697Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.082842Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.083046Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.084047Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.084274Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.084751Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.084990Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.085384Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.086007Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.086444Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.086880Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.087471Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.088134Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.088890Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.089186Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:19:26.089648Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-08T22:19:26.090507Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.092029Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.095761Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-06-08T22:19:26.100620Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0001] Task initiated on local node
[2026-06-08T22:19:26.101593Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0002] Task initiated on local node
[2026-06-08T22:19:26.107167Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-06-08T22:19:26.110650Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0007] Task initiated on local node
[2026-06-08T22:19:26.110911Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0012] Task initiated on local node
[2026-06-08T22:19:26.114510Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0008] Task initiated on local node
[2026-06-08T22:19:26.117544Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0014] Task initiated on local node
[2026-06-08T22:19:26.231099Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.232169Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.236238Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0011] Task initiated on local node
[2026-06-08T22:19:26.497683Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.499001Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.502650Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0008] Task initiated on local node
[2026-06-08T22:19:27.066225Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.067352Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.071595Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-06-08T22:19:27.383780Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.385186Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.389444Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-06-08T22:19:27.751416Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.752597Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.763223Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0003] Task initiated on local node
[2026-06-08T22:19:27.924652Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.925771Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.929412Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-06-08T22:19:28.041414Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.042870Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.047400Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0009] Task initiated on local node
[2026-06-08T22:19:28.075944Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.077031Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.080624Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-06-08T22:19:28.242161Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.243246Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.247202Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0007] Task initiated on local node
[2026-06-08T22:19:28.558812Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.560304Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.563744Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0013] Task initiated on local node
[2026-06-08T22:19:28.592945Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.594714Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.598748Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0006] Task initiated on local node
[2026-06-08T22:19:28.709867Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.711419Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.715205Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0008] Task initiated on local node
[2026-06-08T22:19:28.775997Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.777018Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.780545Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0002] Task initiated on local node
[2026-06-08T22:19:28.841662Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.842731Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.846907Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-06-08T22:19:28.907890Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.909013Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.925236Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0013] Task initiated on local node
[2026-06-08T22:19:29.035273Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.036316Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.040365Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0014] Task initiated on local node
[2026-06-08T22:19:29.301992Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.303075Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.306477Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-06-08T22:19:29.368379Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.369532Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.373366Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-06-08T22:19:29.585474Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.586590Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.590344Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0000] Task initiated on local node
[2026-06-08T22:19:29.752230Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.752336Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.753353Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.753991Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.757555Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-06-08T22:19:29.759520Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0003] Task initiated on local node
[2026-06-08T22:19:29.821020Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.821145Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.822135Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.824538Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.826038Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0012] Task initiated on local node
[2026-06-08T22:19:29.829354Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-06-08T22:19:29.890738Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.891835Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.895257Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0011] Task initiated on local node
[2026-06-08T22:19:30.307497Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.307602Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.307641Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.308622Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.309676Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.310002Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.313228Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-06-08T22:19:30.316425Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0005] Task initiated on local node
[2026-06-08T22:19:30.318475Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0002] Task initiated on local node
[2026-06-08T22:19:30.377639Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.378745Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.382574Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-06-08T22:19:30.694371Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.695392Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.700439Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0012] Task initiated on local node
[2026-06-08T22:19:30.712298Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.713293Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.716888Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0015] Task initiated on local node
[2026-06-08T22:19:30.778143Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.779144Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.782834Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0006] Task initiated on local node
[2026-06-08T22:19:30.844131Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.845126Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.848706Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0010] Task initiated on local node
[2026-06-08T22:19:30.960158Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.961138Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.965114Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0004] Task initiated on local node
[2026-06-08T22:19:31.076560Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.077482Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.081830Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0005] Task initiated on local node
[2026-06-08T22:19:31.795516Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.795612Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.796452Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.798932Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.799639Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0005] Task initiated on local node
[2026-06-08T22:19:31.802099Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0005] Task initiated on local node
[2026-06-08T22:19:31.863512Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.863612Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.864468Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.865251Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.869117Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-06-08T22:19:31.870246Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0013] Task initiated on local node
[2026-06-08T22:19:31.931465Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.931582Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.932398Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.934626Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.936568Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-06-08T22:19:31.937571Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.938318Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0007] Task initiated on local node
[2026-06-08T22:19:31.938769Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.941218Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.941805Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0011] Task initiated on local node
[2026-06-08T22:19:31.942376Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:31.945411Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0009] Task initiated on local node
[2026-06-08T22:19:32.006784Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.006900Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.006923Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.006947Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.007700Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.010075Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.010764Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.013054Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.013328Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0014] Task initiated on local node
[2026-06-08T22:19:32.016553Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0014] Task initiated on local node
[2026-06-08T22:19:32.016762Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-06-08T22:19:32.017672Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-06-08T22:19:32.078220Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.078311Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.078339Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.079078Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.079345Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.080036Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.084107Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0013] Task initiated on local node
[2026-06-08T22:19:32.085755Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0001] Task initiated on local node
[2026-06-08T22:19:32.086929Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0006] Task initiated on local node
[2026-06-08T22:19:32.147522Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.148461Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.151899Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0001] Task initiated on local node
[2026-06-08T22:19:32.213351Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.214199Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.217863Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0007] Task initiated on local node
[2026-06-08T22:19:32.279229Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.280018Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.283498Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0002] Task initiated on local node
[2026-06-08T22:19:32.345030Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.345877Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.349426Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-06-08T22:19:32.461012Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.461840Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.465661Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0004] Task initiated on local node
[2026-06-08T22:19:32.576993Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.577874Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.581955Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-06-08T22:19:32.743883Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.744720Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.748634Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-06-08T22:19:32.809621Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.810632Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.814081Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-06-08T22:19:32.826817Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.827531Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.830332Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0011] Task initiated on local node
[2026-06-08T22:19:32.859659Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.859761Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.860415Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.861303Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.864965Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0010] Task initiated on local node
[2026-06-08T22:19:32.865892Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-06-08T22:19:32.978420Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.978523Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.979218Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.979951Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-06-08T22:19:32.983376Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0012] Task initiated on local node
[2026-06-08T22:19:32.984476Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0015] Task initiated on local node
[2026-06-08T22:19:33.045121Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.045253Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.045943Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.046744Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.050455Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_003_chr4_0000] Task initiated on local node
[2026-06-08T22:19:33.051477Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0004] Task initiated on local node
[2026-06-08T22:19:33.113658Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.113756Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.114416Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.115162Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.119246Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0010] Task initiated on local node
[2026-06-08T22:19:33.120161Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-06-08T22:19:33.182451Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.183186Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.186339Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0000] Task initiated on local node
[2026-06-08T22:19:33.248050Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.248172Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.248811Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.249510Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.252963Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-06-08T22:19:33.253881Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0000] Task initiated on local node
[2026-06-08T22:19:33.314559Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.315279Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.318953Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-06-08T22:19:33.319707Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.320254Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.323802Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0004] Task initiated on local node
[2026-06-08T22:19:33.384838Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.385592Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.389885Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0003] Task initiated on local node
[2026-06-08T22:19:33.601601Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.602289Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.606337Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0006] Task initiated on local node
[2026-06-08T22:19:33.667127Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.667869Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.672556Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0001] Task initiated on local node
[2026-06-08T22:19:33.733716Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.734457Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.738110Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-06-08T22:19:33.799178Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.800051Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.803694Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-06-08T22:19:33.865034Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.865726Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.869888Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-06-08T22:19:33.930489Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.930587Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.931163Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.931402Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.935090Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-06-08T22:19:33.936869Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0009] Task initiated on local node
[2026-06-08T22:19:33.997441Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:33.998237Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.001302Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0008] Task initiated on local node
[2026-06-08T22:19:34.062816Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.277638Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.278409Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.282342Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-06-08T22:19:34.343277Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.343384Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.343946Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.347314Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0010] Task initiated on local node
[2026-06-08T22:19:34.408952Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.723899Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.724527Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.728241Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0000] Task initiated on local node
[2026-06-08T22:19:34.789281Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.903701Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.904285Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:34.907736Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-06-08T22:19:34.969815Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.234970Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.235497Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.239083Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0009] Task initiated on local node
[2026-06-08T22:19:35.267726Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.268317Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.271216Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-06-08T22:19:35.272135Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.304022Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.668765Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.669346Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.673055Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0003] Task initiated on local node
[2026-06-08T22:19:35.734081Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.734441Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.734621Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.734906Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.735125Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.740914Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-08T22:19:35.741107Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-08T22:19:35.742141Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-08T22:19:35.800368Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.800464Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.800488Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.800735Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.801308Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.804843Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-08T22:19:35.806251Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-08T22:19:35.835522Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.843131Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.843349Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:19:35.846265Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-08T22:19:35.875708Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:36.641217Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-08T22:19:44.912220Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-08T22:19:44.912220Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] 
[2026-06-08T22:19:44.912220Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-08T22:19:44.912360Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] 
[2026-06-08T22:19:44.912370Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-08T22:19:44.912381Z] [nf-39fc9646a44024d081f070ef848fde6d-18411-jthst] [607_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec