Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr9_110971973-110972217.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/1390c9f950b73568da0f0b63f996c0/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/13/5e824146ba07eb6f65d51147020cd4/Sig_18_tissue.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/13/5e824146ba07eb6f65d51147020cd4/Sig_18_tissue.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/1390c9f950b73568da0f0b63f996c0/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr9_110971973-110972217.bed.gz.tbi
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-08T22:19:24.791678Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-08T22:19:24.792699Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-08T22:19:24.792721Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-08T22:19:24.792728Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-08T22:19:24.792734Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXx4p2Qp'
[2026-06-08T22:19:24.792738Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-08T22:19:24.792744Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-08T22:19:24.792748Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-08T22:19:24.792752Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] [RunParameters] memMb: 3096076
[2026-06-08T22:19:24.792756Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-08T22:19:24.792759Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-08T22:19:24.792763Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-08T22:19:24.792766Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-08T22:19:24.792770Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-08T22:19:24.793731Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-08T22:19:24.793850Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-08T22:19:24.801541Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-08T22:19:24.802273Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-08T22:19:24.802508Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-08T22:19:24.802743Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-08T22:19:24.802990Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.803660Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.803759Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.803834Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.803954Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.804026Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.804249Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.804340Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.804789Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.804886Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.805125Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.805415Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.805721Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.808736Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.808856Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.808976Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.809042Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.809221Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.809376Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-08T22:19:24.809855Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.810474Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.810657Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.810982Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.811050Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.811163Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.811225Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.811657Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.811724Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.811840Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.811911Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.812186Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.812539Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.812658Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.812718Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.812829Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.812893Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.813005Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.813081Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.813190Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.813254Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.813365Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.813429Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.813540Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.813610Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.813979Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.814319Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.814434Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.814549Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.814662Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.814731Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.814836Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.814901Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.815006Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.815068Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.815177Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.815235Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.815342Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.815455Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.815788Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.816220Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.816822Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.816883Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.816992Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.817142Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.831867Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.831978Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.832048Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.832215Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.832291Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.832378Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.832446Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.832560Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.832630Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:19:24.832699Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-08T22:19:24.839809Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.840411Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.841299Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.842061Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.843270Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.844449Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.847148Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-06-08T22:19:24.848086Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.848977Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.850515Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:24.855783Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-06-08T22:19:24.860254Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-06-08T22:19:24.860769Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-06-08T22:19:24.864402Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-06-08T22:19:24.869545Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-06-08T22:19:24.871914Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-06-08T22:19:24.873343Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-06-08T22:19:25.021262Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.022151Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.025994Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-06-08T22:19:25.137610Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.138547Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.142668Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-06-08T22:19:25.204038Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.204833Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.218008Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-06-08T22:19:25.427744Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.428657Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.432535Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-06-08T22:19:25.708019Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.709208Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.712863Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-06-08T22:19:25.773978Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.775163Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.779546Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-06-08T22:19:25.792050Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.792864Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.796305Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-06-08T22:19:25.857864Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.858754Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:25.862843Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-06-08T22:19:26.024110Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.025043Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.028311Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-06-08T22:19:26.089634Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.090565Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.094348Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-06-08T22:19:26.155321Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.156187Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.160432Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-06-08T22:19:26.189270Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.190159Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.193827Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-06-08T22:19:26.705999Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.707759Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.711449Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-06-08T22:19:26.772583Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.773670Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.777475Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-06-08T22:19:26.838250Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.839392Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.843495Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-06-08T22:19:26.904157Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.904887Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.908561Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-06-08T22:19:26.969565Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.970692Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.974455Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-06-08T22:19:26.978767Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.979721Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:19:26.982727Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-06-08T22:19:27.011741Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.012723Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.016184Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-06-08T22:19:27.020863Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.021733Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.024624Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-06-08T22:19:27.086262Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.086984Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.090953Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-06-08T22:19:27.152110Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.153134Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.157148Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-06-08T22:19:27.217969Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.219002Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.222388Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-06-08T22:19:27.283703Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.283816Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.284671Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.285100Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.289781Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-06-08T22:19:27.290779Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-06-08T22:19:27.350536Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.350648Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.351517Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.351844Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.369526Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-06-08T22:19:27.370505Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-06-08T22:19:27.478043Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.478756Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.482436Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-06-08T22:19:27.511510Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.512386Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.515636Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-06-08T22:19:27.576918Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.577933Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.581920Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-06-08T22:19:27.642704Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.643649Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.647360Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-06-08T22:19:27.708179Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.709023Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.713096Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-06-08T22:19:27.773827Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.773963Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.774796Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.775157Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.778705Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-06-08T22:19:27.780593Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-06-08T22:19:27.839614Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.839715Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.840531Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.841025Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.845196Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-06-08T22:19:27.845894Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-06-08T22:19:27.905968Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.906087Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.906864Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.907932Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.912878Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-06-08T22:19:27.913734Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-06-08T22:19:27.973784Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.973902Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.974663Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.975137Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:27.979112Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-06-08T22:19:27.980190Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-06-08T22:19:28.039963Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.040076Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.040826Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.041272Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.045390Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-06-08T22:19:28.046350Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-06-08T22:19:28.106221Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.106329Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.107193Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.107911Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.111820Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-06-08T22:19:28.124625Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.125302Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.128227Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-06-08T22:19:28.162427Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-06-08T22:19:28.189339Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.189455Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.189502Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.189534Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.190222Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.190949Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.191762Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.192364Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.196340Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-06-08T22:19:28.198078Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-06-08T22:19:28.199491Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-06-08T22:19:28.200746Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-06-08T22:19:28.258592Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.258708Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.258749Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.258777Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.259433Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.263462Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-06-08T22:19:28.374323Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.375072Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.379116Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-06-08T22:19:28.439793Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.754637Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.755341Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.759134Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-06-08T22:19:28.819933Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.985363Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.986032Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:19:28.989675Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-06-08T22:19:29.050694Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.215271Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.215758Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.219076Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-06-08T22:19:29.280196Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.394560Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.395065Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.398947Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-06-08T22:19:29.460148Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.460467Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.460667Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.460996Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.461222Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.465920Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-08T22:19:29.466671Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-08T22:19:29.469177Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-08T22:19:29.527187Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.527267Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.527293Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.527554Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.528196Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.531602Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-08T22:19:29.533254Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-08T22:19:29.593944Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.594049Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.594341Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:19:29.598155Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-08T22:19:29.658891Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:19:30.474788Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-08T22:19:35.355206Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-08T22:19:35.355206Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] 
[2026-06-08T22:19:35.355206Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-08T22:19:35.355299Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] 
[2026-06-08T22:19:35.355306Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-08T22:19:35.355313Z] [nf-6c1390c9f950b73568da0f0b63f996c0-73e35-kpjzl] [601_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec