succeeded COPY_INPUT_TO_OUTDIR (copy_input) 7s 6s - - 3.2 MB 168% 70.3 KB 813 bytes 0 bytes 16.0 KB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:ARRIBA_WORKFLOW:ARRIBA_FILTER_SAME_GENE (rna_s1221_S42) 6s 5s - - 0 bytes 107% 52.8 KB 1.3 KB 0 bytes 12.0 KB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:ARRIBA_WORKFLOW:ARRIBA (rna_s1221_S42) 59s 15s 33s 11s 4.1 GB 100% 4.3 GB 596.0 KB 0 bytes 592.0 KB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:ARRIBA_WORKFLOW:SAMTOOLS_INDEX_FOR_ARRIBA (rna_s1221_S42) 4s 3s - - 3.2 MB 103% 5.8 MB 5.5 KB 0 bytes 12.0 KB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:ARRIBA_WORKFLOW:SAMTOOLS_SORT_FOR_ARRIBA (rna_s1221_S42) 8s 5s 1s 2s 46.3 MB 322% 68.3 MB 11.6 MB 0 bytes 11.6 MB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:ARRIBA_WORKFLOW:SAMTOOLS_VIEW_FOR_ARRIBA (rna_s1221_S42) 42s 2s 29s 11s 1.5 GB 222% 2.9 GB 5.7 MB 0 bytes 5.7 MB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:ARRIBA_WORKFLOW:STAR_FOR_ARRIBA (rna_s1221_S42) 2m 56s 6s 1m 36s 1m 14s 32.0 GB 115% 30.0 GB 184.9 MB 3.9 GB 185.0 MB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:CANCER_INTRONS_TO_VCF (rna_s1221_S42) 6s 5s - - 12.5 MB 85% 1.1 MB 3.0 KB 0 bytes 12.0 KB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:CONTAMINATION_TO_MULTIQC (rna_s1221_S42) 5s 4s 0s 0s 12.7 MB 81% 1.1 MB 1.0 KB 0 bytes 8.0 KB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:CTATSPLICING_STARTOCANCERINTRONS (rna_s1221_S42) 1m 21s 12s 3s 1m 5s 454.5 MB 429% 71.2 MB 2.0 MB 58.0 MB 2.0 MB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:FASTQC (rna_s1221_S42) 12s 7s 3s 2s 656.6 MB 177% 24.1 MB 4.2 MB 0 bytes 4.5 MB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:FUSIONINSPECTOR_WORKFLOW:AGAT_CONVERTSPGFF2TSV (rna_s1221_S42) 18s 15s 1s 2s 60.1 MB 100% 7.8 MB 156.6 KB 0 bytes 156.0 KB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:FUSIONINSPECTOR_WORKFLOW:ARRIBA_VISUALISATION (rna_s1221_S42) 42s 27s 4s 11s 494.8 MB 228% 30.9 MB 16.3 KB 0 bytes 20.0 KB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:FUSIONINSPECTOR_WORKFLOW:FUSIONINSPECTOR (rna_s1221_S42) 8m 20s 5s 6m 49s 1m 25s 35.8 GB 101% 29.4 GB 55.9 MB 527.5 MB 23.1 MB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:FUSIONINSPECTOR_WORKFLOW:VCF_COLLECT (rna_s1221_S42) 10s 6s 1s 3s 14.0 MB 1336% 31.8 MB 8.6 KB 0 bytes 24.0 KB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (rna_s1221_S42) 14s 10s 1s 2s 26.9 MB 900% 50.2 MB 3.8 MB 0 bytes 3.8 MB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:GTF2BED (ref_annot.gtf) 32s 4s 20s 8s 2.9 GB 100% 1.3 GB 27.7 MB 0 bytes 27.7 MB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:KALLISTO_INDEX (Homo_sapiens.GRCh38.102.cdna.all.fa.gz) 4m 46s 4s 4m 36s 6s 2.6 GB 100% 1.7 GB 605.9 MB 0 bytes 605.9 MB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:KALLISTO_QUANT (rna_s1221_S42) 19s 3s 10s 6s 1.3 GB 210% 357.6 MB 8.5 MB 0 bytes 8.5 MB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:KALLISTO_TO_MULTIQC (rna_s1221_S42) 5s 3s 0s 1s 12.7 MB 2030% 4.6 MB 3.4 KB 0 bytes 8.0 KB 1
50 items found |