Error executing process > 'NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:BCLCONVERT (REGRESSION;L006)'

Caused by:
  Process `NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:BCLCONVERT (REGRESSION;L006)` terminated with an error exit status (1)


Command executed:

  bcl-convert \
       \
      --tiles s_6 \
      --output-directory output \
      --bcl-input-directory rundir \
      --sample-sheet SampleSheet.csv
  
  cat <<-END_VERSIONS > versions.yml
  "NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:BCLCONVERT":
      bclconvert: $(bcl-convert -V 2>&1 | head -n 1 | sed 's/^.*Version //')
  END_VERSIONS

Command exit status:
  1

Command output:
  (empty)

Command error:
  DRAGEN replay file saved to /var/log/bcl-convert/dragen_replay_1778890470230_328.json
  sh: /usr/bin/dragen_info: No such file or directory
  DRAGEN registers saved to /var/log/bcl-convert/dragen_info_1778890470230_328.log
  Hang diagnostic saved to /var/log/bcl-convert/hang_diag_1778890470230_328.txt
  pstack saved to /var/log/bcl-convert/pstack_1778890470234_328.log
  bcl-convert Version 4.4.6
  Copyright (c) 2014-2025 Illumina, Inc. 
  
  Run BCL Conversion (BCL directory to *.fastq.gz)
    bcl-convert --bcl-input-directory <BCL_ROOT_DIR> --output-directory <PATH> [options]
  
  Options:
    -h [ --help ]                           Print this help message
    -V [ --version ]                        Print the version and exit
    --output-directory arg                  Output BCL directory for BCL conversion (must be specified)
    -f [ --force ]                          Force: allow destination diretory to already exist
    --bcl-input-directory arg               Input BCL directory for BCL conversion (must be specified)
    --sample-sheet arg                      Path to SampleSheet.csv file (default searched for in --bcl-input-directory)
    --bcl-only-lane arg                     Convert only specified lane number (default all lanes)
    --strict-mode arg                       Abort if any files are missing (false by default)
    --first-tile-only arg                   Only convert first tile of input (for testing & debugging)
    --tiles arg                             Process only a subset of tiles by a regular expression
    --exclude-tiles arg                     Exclude set of tiles by a regular expression
    --bcl-sampleproject-subdirectories arg  Output to subdirectories based upon sample sheet 'Sample_Project' column
    --sample-name-column-enabled arg        Use sample sheet 'Sample_Name' column when naming fastq files & 
                                            subdirectories
    --fastq-gzip-compression-level arg      Set fastq output compression level 0-9 (default 1)
    --shared-thread-odirect-output arg      Use linux native asynchronous io (io_submit) for file output (Default=false)
    --bcl-num-parallel-tiles arg            # of tiles to process in parallel (default 1)
    --bcl-num-conversion-threads arg        # of threads for conversion (per tile, default # cpu threads)
    --bcl-num-compression-threads arg       # of threads for fastq.gz output compression (per tile, default # cpu 
                                            threads, or HW+12)
    --bcl-num-decompression-threads arg     # of threads for bcl/cbcl input decompression (per tile, default half # cpu 
                                            threads, or HW+8. Only applies when preloading files)
    --bcl-only-matched-reads arg            For pure BCL conversion, do not output files for 'Undetermined' [unmatched] 
                                            reads (output by default)
    --run-info arg                          Path to RunInfo.xml file (default root of BCL input directory)
    --no-lane-splitting arg                 Do not split FASTQ file by lane (false by default)
    --create-fastq-for-index-reads arg
    --num-unknown-barcodes-reported arg     # of Top Unknown Barcodes to output (1000 by default)
    --bcl-validate-sample-sheet-only arg    Only validate RunInfo.xml & SampleSheet files (produce no FASTQ files)
    --output-legacy-stats arg               Also output stats in legacy (bcl2fastq2) format (false by default)
    --bcl-enable-tile-metrics arg           Output per-tile metrics in addition to aggregate (true by default)
    --bcl-enable-adapter-cycle-metrics arg  Output per-cycle adapter metrics in addition to aggregate (true by default)
    --bcl-enable-detailed-demux-metrics arg Output demux error cycles and transitions (true by default)
    --no-sample-sheet arg                   Enable legacy no-sample-sheet operation (No demux or trimming. No settings 
                                            supported. False by default, not recommended
  
  ERROR: Assertion failed in ../src/host/dragen_api/file_io/bcl/tile_filtering.cpp line 186 -- false -- Every tile regular expression specified must match at least one tile

Work dir:
  s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/a511fa272ccbde3c563b61b96da4d3

Container:
  292967571998.dkr.ecr.us-west-2.amazonaws.com/daq/bclconvert:4.4.6

Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line