Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/29dfb35cd2f3aa44d55b1d0d8d1d21/rna_s1200_S21_preseq_mqc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/1070a33a43b9186749035cb17edb26/rna_s1221_S42_trimmed_2_fastqc.zip
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/fbc5418d9c9ddb01b28343180769cf/rna_s1221_S42_collectinsertsize.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/8ff173d8749e74fd955844a7d9c43e/rna_s1221_S42.pos.DupRate.xls
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c2/3aaca267353c8b7571abd0f5aa10bb/rna_s1200_S21_rna_metrics.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/3bb1334599f6c135cf5b6ba96337cc/rna_s1200_S21.fastp.html
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/24/95a46e583a5e4b659eecbafaf58f83/rna_s1200_S21.ReadsPerGene.out.tab
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/34/fe9ac352e39c00c662479f9b172880/rna_s1221_S42.fastp.html
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/be/6d1d6bb6f43debd9a857a209eba4db/rna_s1221_S42.junction_annotation.log
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3d/72439a1828d2841d65821d590ee474/rna_s1200_S21.read_distribution.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/2d8b7fbf58b802263f26f56a397571/rna_s1221_S42.Log.final.out
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/tmp/ed/df523ae749693a9aae2fa097ae4e1a/workflow_summary_mqc.yaml
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c8/1c1da0c0f3820a2b5091d3f07e3816/rna_s1200_S21_contamination_mqc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/0ac981d34a83850fd425340af17e0d/rna_s1221_S42.junctionSaturation_plot.r
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/49d2fddd500b9712b826fbb6b9f0c0/rna_s1200_S21.bam_stat.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/30/513e5070f91dd7536f65ee2c2d75b0/rna_s1221_S42_contamination_mqc.tsv
  Downloading: s3://natera-rnd-pltf-dev-s3-gitlab-results/rnafusion/build2752936/regression-run/62276983/pipeline_info/nf_core_pipeline_software_mqc_versions.yml
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a2/652829ec133c43d0fcb643202652f8/rna_s1221_S42.inner_distance_freq.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/24/95a46e583a5e4b659eecbafaf58f83/rna_s1200_S21.Log.final.out
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/fc5fd6618908b7f6efed611e235dca/rna_s1221_S42.lc_extrap.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/0a2744dcde61220a340475ac6f7831/rna_s1221_S42_kallisto_mqc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/34/fe9ac352e39c00c662479f9b172880/rna_s1221_S42.fastp.json
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/8fd9309c6ddecb76ca86ca3f037ecc/rna_s1221_S42_1_fastqc.zip
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/590671219cebd030909bc0c77074f3/rna_s1221_S42.read_distribution.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/2d8b7fbf58b802263f26f56a397571/rna_s1221_S42.ReadsPerGene.out.tab
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/45/ab68cef1ba4932b819e2ac4f61a102/rna_s1221_S42.bam_stat.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/dd5e97f7c75af188f0d46b10f3dd33/rna_s1200_S21_trimmed_1_fastqc.zip
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c6/02b1bc3e807a700d52d3247a888c4b/rna_s1200_S21.attempt1.command.log
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/tmp/d9/4037d283d22de232620894043e1865/methods_description_mqc.yaml
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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/a4cdd6771ce284fdb1e96bc597158c/rna_s1200_S21_kallisto_mqc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/efd6d00c5d7abf7ade7834e270acac/rna_s1200_S21.junction_annotation.log
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ef/c7284313746c220af28704834b99aa/rna_s1221_S42_seqtool_mqc.tsv
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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/0b4d3be414ba4dc73b5a98e17251db/rna_s1200_S21_1_fastqc.zip
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8f/2b44ba5cefb1135b930adf23d3dbc4/rna_s1200_S21_seqtool_mqc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3d/8ac21429306e2c41c41199d5b339ee/rna_s1200_S21.inner_distance_freq.txt
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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/544e4b5b2fc14854e926b5525b37b1/rna_s1200_S21.junctionSaturation_plot.r
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/8fd9309c6ddecb76ca86ca3f037ecc/rna_s1221_S42_2_fastqc.zip
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/879c2e6e81a402ccf965a81a5065a8/rna_s1200_S21.log
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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/1ea381c6a1f18b71dbb0313b75ed03/.command.sh
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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/1070a33a43b9186749035cb17edb26/rna_s1221_S42_trimmed_1_fastqc.zip
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c1/5f33335192a8f9030108ad6c2547bf/rna_s1221_S42.md.bam.metrics
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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/8cb1155b0d7b9ee339676c4c75eb5e/rna_s1200_S21.md.bam.metrics
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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-e685caab-2e0f-4571-8d1e-b28cce164e07/f8/edfb9162ae389f6165f4774f3615c5/multiqc_config.yml
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/0b4d3be414ba4dc73b5a98e17251db/rna_s1200_S21_2_fastqc.zip
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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/18/b8eb32fb8a1e705e85da719a9586e9/rna_s1221_S42.log
==> STAGING COMPLETE (58 inputs)


  /// MultiQC 🔍 | v1.21

|           multiqc | MultiQC Version v1.35 now available!
|           multiqc | Module(s) in config.run_modules are unknown: arriba
|           multiqc | Only using modules: custom_content, fastqc, fastp, star, samtools, picard, kallisto, rseqc, preseq
|           multiqc | Search path : /tmp/nxf.CABBQ4NHbF
|         searching | ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 100% 91/91  
|    custom_content | preseq_metrics: Found 2 General Statistics columns
|    custom_content | nf-core-rnafusion-summary: Found 1 sample (html)
|    custom_content | rna_contamination: Found 2 General Statistics columns
|    custom_content | kallisto_qc_metrics: Found 2 General Statistics columns
|    custom_content | nf-core-rnafusion-methods-description: Found 1 sample (html)
|    custom_content | seqtools_metrics: Found 2 General Statistics columns
|          kallisto | Found 2 reports
|            picard | Found 2 InsertSizeMetrics reports
|            picard | Found 2 MarkDuplicates reports
|            picard | Found 2 RnaSeqMetrics reports
|            preseq | Found 2 reports
|             rseqc | Found 2 read_distribution reports
|             rseqc | Found 2 inner_distance reports
|             rseqc | Found 2 read_duplication reports
|             rseqc | Found 2 junction_annotation reports
|             rseqc | Found 2 junction_saturation reports
|             rseqc | Found 2 infer_experiment reports
|             rseqc | Found 2 bam_stat reports
|              star | Found 2 reports and 2 gene count files
|             fastp | Found 2 reports
|            fastqc | Found 8 reports
|            fastqc | Found 4 reports
|           multiqc | Report      : multiqc_report.html
|           multiqc | Data        : multiqc_data
|           multiqc | Plots       : multiqc_plots
|           multiqc | MultiQC complete