File Info

Filename
multiqc_general_stats.tsv
Full Path
s3://natera-rnd-pltf-dev-s3-gitlab-results/rnafusion/build2756014/regression-run/62365443/QC/multiqc/multiqc_data/multiqc_general_stats.tsv
Size
2.9 KB
Workflow Run
gitlab-rnafusion-build2756014-regression-run-62365443
Published
May 27, 2026 9:30 AM

Content

View in new tab
sample_id TOTAL_READS EXPECTED_DISTINCT FRAGMENT_LENGTH_MEAN FRAGMENT_LENGTH_MEDIAN PCT_MITO_EST_COUNTS PCT_RIBO_EST_COUNTS PCT_HK_EST_COUNTS PCT_MALE_EST_COUNTS MITOCHONDRIAL_CONTAMINATION RIBOSOMAL_CONTAMINATION PCT_HK_TPM PCT_MALE_TPM IS_CONTAMINATED CONTAMINATION_PCT READS FRAC_UNMAPPED FRAC_DUPES UNIQUE_READS FRAC_READS_ON_TARGET FRAC_PAIRS_ON_TARGET FRAC_READS_OFF_TARGET FRAC_PAIRS_OFF_TARGET READS_ON_TARGET PAIRS_ON_TARGET READS_OFF_TARGET PAIRS_OFF_TARGET MEAN_DEPTH Q50_DEPTH FRAC_BASES_GT30X FRAC_BASES_GT100X N_Q30 GC_BIAS SUMMED_MEDIAN SUMMED_MEAN PERCENT_DUPLICATION PCT_RIBOSOMAL_BASES PCT_MRNA_BASES PROPER_PAIRS_PERCENT UNIQUELY_MAPPED_PERCENT MAPPED_READS PCT_DUPLICATION AFTER_FILTERING_Q30_RATE AFTER_FILTERING_Q30_BASES FILTERING_RESULT_PASSED_FILTER_READS AFTER_FILTERING_GC_CONTENT PCT_SURVIVING PCT_ADAPTER FRAGMENT_LENGTH PERCENT_ALIGNED PSEUDOALIGNED_READS PERCENT_DUPLICATES PERCENT_GC AVG_SEQUENCE_LENGTH MEDIAN_SEQUENCE_LENGTH PERCENT_FAILS TOTAL_SEQUENCES
rna_s1200_S21 9999000000.0 53979070.0 181.2 166.0 0.0 4.58 2.97 0.0 0.0 10.89 3.45 0.0 Skipped N/A 19875412.0 0.003853 0.183621 16225876.0 0.945347 0.972121 0.049933 0.027879 15339088.0 7832369.0 810206.0 224622.0 34.559207 5.0 0.293198 0.084685 0.985625 0.0 294 762.227728 0.184331 0.0 96.3936 90.33600244662823 95.95 9534804.0 13.3191 0.984633 2750334612.0 19875412.0 0.535761 99.37706 32.738935000000005
rna_s1200_S21_1 181.2 97.82623877180508 9721684.0 55.1196738153078 53.0 150.0 150 27.27272727272727 10000000.0
rna_s1200_S21_2 51.30713513081027 53.0 150.0 150 18.181818181818183 10000000.0
rna_s1200_S21_trimmed_1 55.20979973333161 53.0 140.52089164239715 150 18.181818181818183 9937706.0
rna_s1200_S21_trimmed_2 51.43328044275465 53.0 140.53251514987463 150 9.090909090909092 9937706.0
rna_s1221_S42 9999000000.0 53000545.0 175.4 161.0 0.01 4.71 2.83 0.0 0.01 11.32 3.19 0.0 Skipped N/A 19864012.0 0.004391 0.198705 15916933.0 0.936077 0.962008 0.058443 0.037992 14899481.0 7595968.0 930229.0 299983.0 32.870035 5.0 0.28172 0.079333 0.98502 0.0 255 661.011966 0.199581 0.0873 95.2555 80.25001383886074 94.32 9368114.0 13.947899999999999 0.983893 2705779238.0 19864012.0 0.533166 99.32006 36.832589999999996
rna_s1221_S42_1 175.4 96.36796433671103 9571272.0 57.988386175167875 52.0 150.0 150 27.27272727272727 10000000.0
rna_s1221_S42_2 52.2829601665107 53.0 150.0 150 18.181818181818183 10000000.0
rna_s1221_S42_trimmed_1 58.06626133669685 53.0 138.4228959386452 150 18.181818181818183 9932006.0
rna_s1221_S42_trimmed_2 52.384744289571934 53.0 138.44541374622608 150 9.090909090909092 9932006.0
11 rows