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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/93/f5a20d1c7953fefbe879f6562c99b8/rna_s1221_S42_1_fastqc.zip
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/bdd61ad2fe997e81ba5f3cd6c3429a/rna_s1221_S42.pos.DupRate.xls
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/31/2b1c158593d35426d7bec03efe75ce/rna_s1221_S42.inner_distance_freq.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/cab75cb14d3b678560cc883de3b96e/rna_s1221_S42.read_distribution.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/9a59678e42cbec632bf3d4427dc496/rna_s1221_S42_collectinsertsize.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/tmp/28/21cc965d4c54d50551d2add915336e/workflow_summary_mqc.yaml
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/5183d3cac352b6e18f3b39227370b6/rna_s1221_S42.md.bam.metrics
  Downloading: s3://natera-rnd-pltf-dev-s3-gitlab-results/rnafusion/build2756014/regression-run/62365443/pipeline_info/nf_core_pipeline_software_mqc_versions.yml
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/65/ef5d1527101e2289b751125ea98fcf/rna_s1221_S42.fastp.json
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b3/1df8bc2285087296ed0f95ce8238b9/rna_s1221_S42_trimmed_1_fastqc.zip
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/12/0f932e34e57f47df513fd38c1bfe0f/rna_s1221_S42_kallisto_mqc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1e/c5b10915a5bee913368c87b1addf8b/rna_s1200_S21_trimmed_2_fastqc.zip
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/2005bec3fb08682f44e5f8a6bf54fc/rna_s1221_S42_preseq_mqc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/43/9b89a9d274dfabbc3fbfcd87dc7aa0/rna_s1200_S21.junctionSaturation_plot.r
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/8940e2b917761cb948451fca89e0f4/rna_s1200_S21.Log.final.out
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/50d2a0bcbab45fae1d5c701aba799c/rna_s1200_S21.lc_extrap.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/15/5259a75936fb13b12462288861393e/rna_s1200_S21.infer_experiment.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/39/66d7df416759c78e2ce4016f70ecbf/rna_s1200_S21_combined_fusions_arriba_visualisation.pdf
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/f2c84694dbb674d25d9c4c251e5973/rna_s1221_S42.junction_annotation.log
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/tmp/d0/6bea10881e8a3d5310ba755705a70a/methods_description_mqc.yaml
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c1/f0994d06dcc4c12170f79bfcf324a3/rna_s1200_S21.fastp.json
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/b15fcfe79f1b2881eb7ac0e390cbf7/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/b9c27e7d9bf86c2d5109727b858f31/rna_s1200_S21_kallisto_mqc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/93/f5a20d1c7953fefbe879f6562c99b8/rna_s1221_S42_2_fastqc.zip
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/66a6ac49ada61dcbb1eaac7080f779/rna_s1200_S21.log
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/2ae8034781f657f2e179c9a33682ea/rna_s1200_S21.junction_annotation.log
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b3/1df8bc2285087296ed0f95ce8238b9/rna_s1221_S42_trimmed_2_fastqc.zip
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/48b545e2b3129aaddd691139f87736/rna_s1200_S21.inner_distance_freq.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/65/ef5d1527101e2289b751125ea98fcf/rna_s1221_S42.fastp.html
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/8c51e677048cb72c10a987d74941dc/rna_s1221_S42.ReadsPerGene.out.tab
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/50d2a0bcbab45fae1d5c701aba799c/rna_s1200_S21.attempt1.command.log
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3a/8c5c32a28bb17b0d460cd7ca5a2ecc/rna_s1200_S21_contamination_mqc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/b15fcfe79f1b2881eb7ac0e390cbf7/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/65/5f235e37c562ad5d5670cff6d96162/rna_s1221_S42.attempt1.command.log
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/929b22a9678e3de1d10e6342dd8d6e/rna_s1221_S42.junctionSaturation_plot.r
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/9f703d27a467b50f6d5b63020de07c/rna_s1200_S21_seqtool_mqc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/276a5b7cb5469752b9f3101f7406de/rna_s1200_S21_rna_metrics.txt
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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/53/ed89dc7718ad0c5308ee0d40490fbb/rna_s1200_S21.pos.DupRate.xls
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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/8c51e677048cb72c10a987d74941dc/rna_s1221_S42.Log.final.out
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/65/5f235e37c562ad5d5670cff6d96162/rna_s1221_S42.lc_extrap.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/8940e2b917761cb948451fca89e0f4/rna_s1200_S21.ReadsPerGene.out.tab
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/ce60a8bdd34f8dfa21766a3d2374ea/rna_s1221_S42_contamination_mqc.tsv
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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1e/c5b10915a5bee913368c87b1addf8b/rna_s1200_S21_trimmed_1_fastqc.zip
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-d614e302-e77a-41ea-a26f-93b3c918e92f/e2/10f426f3d46b1ee43ddf3df5999b5b/multiqc_config.yml
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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/89/e0b506425219fd3c2da0cc67be0bd3/rna_s1221_S42.infer_experiment.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/7ce2030c8a1e1b7134a9d7996e84a6/rna_s1221_S42_combined_fusions_arriba_visualisation.pdf
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/95/a937e6fa9d57dbd6d145299466fa09/rna_s1200_S21_collectinsertsize.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7c/b4ed08e5776cc82f64c83edbb1de3e/rna_s1200_S21.read_distribution.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9b/955cbf9a57e388d4be17160c182ec3/rna_s1221_S42_rna_metrics.txt
==> STAGING COMPLETE (58 inputs)


  /// MultiQC 🔍 | v1.21

|           multiqc | MultiQC Version v1.35 now available!
|           multiqc | Module(s) in config.run_modules are unknown: arriba
|           multiqc | Only using modules: custom_content, fastqc, fastp, star, samtools, picard, kallisto, rseqc, preseq
|           multiqc | Search path : /tmp/nxf.6foZywg2Yd
|         searching | ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 100% 91/91  
|    custom_content | nf-core-rnafusion-summary: Found 1 sample (html)
|    custom_content | preseq_metrics: Found 2 General Statistics columns
|    custom_content | kallisto_qc_metrics: Found 2 General Statistics columns
|    custom_content | nf-core-rnafusion-methods-description: Found 1 sample (html)
|    custom_content | rna_contamination: Found 2 General Statistics columns
|    custom_content | seqtools_metrics: Found 2 General Statistics columns
|          kallisto | Found 2 reports
|            picard | Found 2 InsertSizeMetrics reports
|            picard | Found 2 MarkDuplicates reports
|            picard | Found 2 RnaSeqMetrics reports
|            preseq | Found 2 reports
|             rseqc | Found 2 read_distribution reports
|             rseqc | Found 2 inner_distance reports
|             rseqc | Found 2 read_duplication reports
|             rseqc | Found 2 junction_annotation reports
|             rseqc | Found 2 junction_saturation reports
|             rseqc | Found 2 infer_experiment reports
|             rseqc | Found 2 bam_stat reports
|              star | Found 2 reports and 2 gene count files
|             fastp | Found 2 reports
|            fastqc | Found 8 reports
|            fastqc | Found 4 reports
|           multiqc | Report      : multiqc_report.html
|           multiqc | Data        : multiqc_data
|           multiqc | Plots       : multiqc_plots
|           multiqc | MultiQC complete