Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/b12062e5546550aded03288703fff3/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/2ae8034781f657f2e179c9a33682ea/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/2ae8034781f657f2e179c9a33682ea/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/8940e2b917761cb948451fca89e0f4/rna_s1200_S21.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/af/46199de6db590afebdc3d82bc19c9e/rna_s1200_S21.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 11742011
[W::hts_idx_load3] The index file is older than the data file: rna_s1200_S21.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	11742011
Known Splicing Events:	11650978
Partial Novel Splicing Events:	63942
Novel Splicing Events:	24871
Filtered Splicing Events:	2220

Total splicing  Junctions:	179703
Known Splicing Junctions:	150896
Partial Novel Splicing Junctions:	23555
Novel Splicing Junctions:	5252

===================================================================
Create BED file ...
Create Interact file ...