File Info

Filename
output/Logs/Info.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/00/e37ac252b865f114d95b969de28b92/output/Logs/Info.log
Size
2.8 KB
Attempt
2026-05-27T15:54:53Z thread 339 Sample sheet being processed by common lib? Yes
2026-05-27T15:54:53Z thread 339 SampleSheet Settings: 
2026-05-27T15:54:53Z thread 339   OverrideCycles = Y150;I8;I8;Y150
2026-05-27T15:54:53Z thread 339 
2026-05-27T15:54:53Z thread 339 shared-thread-linux-native-asio output is disabled
2026-05-27T15:54:53Z thread 339 bcl-convert Version 4.4.6
2026-05-27T15:54:53Z thread 339 Copyright (c) 2014-2025 Illumina, Inc.
2026-05-27T15:54:53Z thread 339 Command Line: --tiles s_1 --output-directory output --bcl-input-directory rundir --sample-sheet SampleSheet.csv 
2026-05-27T15:54:53Z thread 339 Conversion Begins.
2026-05-27T15:54:53Z thread 339 Input BCL Information:
2026-05-27T15:54:53Z thread 339     Read Structure: 2026-05-27T15:54:53Z thread 339 Y1502026-05-27T15:54:53Z thread 339 ;2026-05-27T15:54:53Z thread 339 I82026-05-27T15:54:53Z thread 339 ;2026-05-27T15:54:53Z thread 339 I82026-05-27T15:54:53Z thread 339 ;2026-05-27T15:54:53Z thread 339 Y1502026-05-27T15:54:53Z thread 339 
2026-05-27T15:54:53Z thread 339     RunInfo.xml file lists: 4 lanes, 4 tiles
2026-05-27T15:54:53Z thread 339     BCL file format: bcl.gz
2026-05-27T15:54:53Z thread 339     Positions file format: locs
2026-05-27T15:54:53Z thread 339     Filter file format: filter
2026-05-27T15:54:53Z thread 339 Conversion Information:
2026-05-27T15:54:53Z thread 339     Tile filtering: converting 1/4 tiles
2026-05-27T15:54:53Z thread 339     Lane 2 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-05-27T15:54:53Z thread 339     Lane 3 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-05-27T15:54:53Z thread 339     Lane 4 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-05-27T15:54:53Z thread 339     Sample Count: 2
2026-05-27T15:54:53Z thread 339     Expected number of sample FASTQ files to be created: 4
2026-05-27T15:54:53Z thread 339 # CPU hw threads available: 64
2026-05-27T15:54:53Z thread 339 Parallel Tiles: 4. Threads Per Tile: 16
2026-05-27T15:54:53Z thread 339 SW compressors: 64
2026-05-27T15:54:53Z thread 339 SW decompressors: 32
2026-05-27T15:54:53Z thread 339 SW FASTQ compression level: 1
2026-05-27T15:54:56Z thread 339 Lane 1 Post-run Information:
2026-05-27T15:54:56Z thread 339     Total clusters: 5000000
2026-05-27T15:54:56Z thread 339     Total Genomic Reads: 10000000
2026-05-27T15:54:56Z thread 339     Total Genomic Input Gigabases 1.50
2026-05-27T15:54:56Z thread 339     Minimum reads for a sample: 4999006
2026-05-27T15:54:56Z thread 339     Maximum reads for a sample: 5000994
2026-05-27T15:54:56Z thread 339     Average reads per sample: 5000000.00
2026-05-27T15:54:56Z thread 339     Undetermined reads: 0
2026-05-27T15:54:56Z thread 339 Conversion Complete.