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Filename
multiqc_general_stats.json
Full Path
s3://natera-rnd-pltf-dev-s3-gitlab-results/rnafusion/build2756346/regression-run/62380552/QC/multiqc/multiqc_data/multiqc_general_stats.json
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65.3 KB
Workflow Run
gitlab-rnafusion-build2756346-regression-run-62380552
Published
May 27, 2026 8:52 AM

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{
  "source_file": "multiqc_general_stats.txt",
  "total_samples": 10,
  "metrics": [
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      "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
      "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null,
      "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null,
      "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null,
      "STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
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      "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "Skipped",
      "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": "N/A",
      "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 175.6,
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      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.01,
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      "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 255,
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      "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
      "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
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      "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
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