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multiqc_general_stats.tsv
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s3://natera-rnd-pltf-dev-s3-gitlab-results/rnafusion/build2756346/regression-run/62380552/QC/multiqc/multiqc_data/multiqc_general_stats.tsv
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gitlab-rnafusion-build2756346-regression-run-62380552
Published
May 27, 2026 8:52 AM

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sample_id TOTAL_READS EXPECTED_DISTINCT READS FRAC_UNMAPPED FRAC_DUPES UNIQUE_READS FRAC_READS_ON_TARGET FRAC_PAIRS_ON_TARGET FRAC_READS_OFF_TARGET FRAC_PAIRS_OFF_TARGET READS_ON_TARGET PAIRS_ON_TARGET READS_OFF_TARGET PAIRS_OFF_TARGET MEAN_DEPTH Q50_DEPTH FRAC_BASES_GT30X FRAC_BASES_GT100X N_Q30 GC_BIAS IS_CONTAMINATED CONTAMINATION_PCT FRAGMENT_LENGTH_MEAN FRAGMENT_LENGTH_MEDIAN PCT_MITO_EST_COUNTS PCT_RIBO_EST_COUNTS PCT_HK_EST_COUNTS PCT_MALE_EST_COUNTS MITOCHONDRIAL_CONTAMINATION RIBOSOMAL_CONTAMINATION PCT_HK_TPM PCT_MALE_TPM SUMMED_MEDIAN SUMMED_MEAN PERCENT_DUPLICATION PCT_RIBOSOMAL_BASES PCT_MRNA_BASES PROPER_PAIRS_PERCENT UNIQUELY_MAPPED_PERCENT MAPPED_READS PCT_DUPLICATION AFTER_FILTERING_Q30_RATE AFTER_FILTERING_Q30_BASES FILTERING_RESULT_PASSED_FILTER_READS AFTER_FILTERING_GC_CONTENT PCT_SURVIVING PCT_ADAPTER FRAGMENT_LENGTH PERCENT_ALIGNED PSEUDOALIGNED_READS PERCENT_DUPLICATES PERCENT_GC AVG_SEQUENCE_LENGTH MEDIAN_SEQUENCE_LENGTH PERCENT_FAILS TOTAL_SEQUENCES
rna_s1200_S21 9999000000.0 53979070.0 19875412.0 0.003853 0.183621 16225876.0 0.945347 0.972121 0.049933 0.027879 15339088.0 7832369.0 810206.0 224622.0 34.559207 5.0 0.293198 0.084685 0.985625 0.0 Skipped N/A 181.3 167.0 0.0 4.58 2.97 0.0 0.0 10.9 3.44 0.0 294 762.227728 0.184331 0.0 96.3936 90.33600244662823 95.95 9534804.0 13.3191 0.984633 2750334612.0 19875412.0 0.535761 99.37706 32.738935000000005
rna_s1200_S21_1 181.3 97.82623877180508 9721684.0 55.06766202745617 53.0 150.0 150 27.27272727272727 10000000.0
rna_s1200_S21_2 51.29223181161508 53.0 150.0 150 18.181818181818183 10000000.0
rna_s1200_S21_trimmed_1 55.15333452297679 53.0 140.52089164239715 150 18.181818181818183 9937706.0
rna_s1200_S21_trimmed_2 51.418784339055215 53.0 140.53251514987463 150 9.090909090909092 9937706.0
rna_s1221_S42 9999000000.0 53000545.0 19864012.0 0.004391 0.198705 15916933.0 0.936077 0.962008 0.058443 0.037992 14899481.0 7595968.0 930229.0 299983.0 32.870035 5.0 0.28172 0.079333 0.98502 0.0 Skipped N/A 175.6 161.0 0.01 4.71 2.83 0.0 0.01 11.32 3.19 0.0 255 661.011966 0.199581 0.0873 95.2555 80.25001383886074 94.32 9368114.0 13.947899999999999 0.983893 2705779238.0 19864012.0 0.533166 99.32006 36.832589999999996
rna_s1221_S42_1 175.6 96.36796433671103 9571272.0 58.127453358315755 52.0 150.0 150 27.27272727272727 10000000.0
rna_s1221_S42_2 52.35146639744933 53.0 150.0 150 18.181818181818183 10000000.0
rna_s1221_S42_trimmed_1 58.214931277870946 53.0 138.4228959386452 150 18.181818181818183 9932006.0
rna_s1221_S42_trimmed_2 52.464963982921226 53.0 138.44541374622608 150 9.090909090909092 9932006.0
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