File Info

Filename
output/Logs/Info.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/74/66647b26aa91761bd8d318ac14c493/output/Logs/Info.log
Size
2.8 KB
Attempt
2026-05-27T15:19:36Z thread 393 Sample sheet being processed by common lib? Yes
2026-05-27T15:19:36Z thread 393 SampleSheet Settings: 
2026-05-27T15:19:36Z thread 393   OverrideCycles = Y150;I8;I8;Y150
2026-05-27T15:19:36Z thread 393 
2026-05-27T15:19:36Z thread 393 shared-thread-linux-native-asio output is disabled
2026-05-27T15:19:36Z thread 393 bcl-convert Version 4.4.6
2026-05-27T15:19:36Z thread 393 Copyright (c) 2014-2025 Illumina, Inc.
2026-05-27T15:19:36Z thread 393 Command Line: --tiles s_4 --output-directory output --bcl-input-directory rundir --sample-sheet SampleSheet.csv 
2026-05-27T15:19:36Z thread 393 Conversion Begins.
2026-05-27T15:19:36Z thread 393 Input BCL Information:
2026-05-27T15:19:36Z thread 393     Read Structure: 2026-05-27T15:19:36Z thread 393 Y1502026-05-27T15:19:36Z thread 393 ;2026-05-27T15:19:36Z thread 393 I82026-05-27T15:19:36Z thread 393 ;2026-05-27T15:19:36Z thread 393 I82026-05-27T15:19:36Z thread 393 ;2026-05-27T15:19:36Z thread 393 Y1502026-05-27T15:19:36Z thread 393 
2026-05-27T15:19:36Z thread 393     RunInfo.xml file lists: 4 lanes, 4 tiles
2026-05-27T15:19:36Z thread 393     BCL file format: bcl.gz
2026-05-27T15:19:36Z thread 393     Positions file format: locs
2026-05-27T15:19:36Z thread 393     Filter file format: filter
2026-05-27T15:19:36Z thread 393 Conversion Information:
2026-05-27T15:19:36Z thread 393     Tile filtering: converting 1/4 tiles
2026-05-27T15:19:36Z thread 393     Lane 1 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-05-27T15:19:36Z thread 393     Lane 2 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-05-27T15:19:36Z thread 393     Lane 3 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-05-27T15:19:36Z thread 393     Sample Count: 2
2026-05-27T15:19:36Z thread 393     Expected number of sample FASTQ files to be created: 4
2026-05-27T15:19:36Z thread 393 # CPU hw threads available: 64
2026-05-27T15:19:36Z thread 393 Parallel Tiles: 4. Threads Per Tile: 16
2026-05-27T15:19:36Z thread 393 SW compressors: 64
2026-05-27T15:19:36Z thread 393 SW decompressors: 32
2026-05-27T15:19:36Z thread 393 SW FASTQ compression level: 1
2026-05-27T15:19:38Z thread 393 Lane 4 Post-run Information:
2026-05-27T15:19:38Z thread 393     Total clusters: 5000000
2026-05-27T15:19:38Z thread 393     Total Genomic Reads: 10000000
2026-05-27T15:19:38Z thread 393     Total Genomic Input Gigabases 1.50
2026-05-27T15:19:38Z thread 393     Minimum reads for a sample: 4999702
2026-05-27T15:19:38Z thread 393     Maximum reads for a sample: 5000298
2026-05-27T15:19:38Z thread 393     Average reads per sample: 5000000.00
2026-05-27T15:19:38Z thread 393     Undetermined reads: 0
2026-05-27T15:19:39Z thread 393 Conversion Complete.