File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c2/d6583eb2a1615bb583ac9b1728cec6/.command.log
Size
2.9 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (rna_s1221_S42)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-a96df14d-d9d2-4aec-a036-bcc82f98afd5/b7/f22ab93c1ac6074c590da6a60fae21/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c2/d6583eb2a1615bb583ac9b1728cec6/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/25/7692d83970a605f51fb05b1d31eea4/rna_s1221_S42.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/74/bb900551c560779699122b50ff5c7d/rna_s1221_S42.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c2/d6583eb2a1615bb583ac9b1728cec6/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...

  0%|          | 0/10 [00:00<?, ?it/s]FGFR3--TACC3
starfusion
arriba
LMNA--NTRK1
starfusion
arriba
PAX8--PPARG
starfusion
arriba
ETV6--NTRK3
starfusion
arriba
EGFR--SEPTIN14
starfusion
arriba
FGFR3--BAIAP2L1
starfusion
arriba
KIF5B--RET
starfusion
CD74--ROS1
starfusion
NCOA4--RET
starfusion
arriba
SLC45A3--BRAF
starfusion
arriba

Processing FGFR3--TACC3:   0%|          | 0/10 [00:00<?, ?it/s]
Processing FGFR3--TACC3:  10%|█         | 1/10 [00:00<00:00,  9.20it/s]
Processing LMNA--NTRK1:  10%|█         | 1/10 [00:00<00:00,  9.20it/s] 
Processing LMNA--NTRK1:  20%|██        | 2/10 [00:00<00:00,  9.35it/s]
Processing PAX8--PPARG:  20%|██        | 2/10 [00:00<00:00,  9.35it/s]
Processing PAX8--PPARG:  30%|███       | 3/10 [00:00<00:00,  9.40it/s]
Processing ETV6--NTRK3:  30%|███       | 3/10 [00:00<00:00,  9.40it/s]
Processing ETV6--NTRK3:  40%|████      | 4/10 [00:00<00:00,  9.42it/s]
Processing EGFR--SEPTIN14:  40%|████      | 4/10 [00:00<00:00,  9.42it/s]
Processing EGFR--SEPTIN14:  50%|█████     | 5/10 [00:00<00:00,  9.44it/s]
Processing FGFR3--BAIAP2L1:  50%|█████     | 5/10 [00:00<00:00,  9.44it/s]
Processing FGFR3--BAIAP2L1:  60%|██████    | 6/10 [00:00<00:00,  9.46it/s]
Processing KIF5B--RET:  60%|██████    | 6/10 [00:00<00:00,  9.46it/s]     
Processing KIF5B--RET:  70%|███████   | 7/10 [00:00<00:00,  9.48it/s]
Processing CD74--ROS1:  70%|███████   | 7/10 [00:00<00:00,  9.48it/s]
Processing CD74--ROS1:  80%|████████  | 8/10 [00:00<00:00,  9.50it/s]
Processing NCOA4--RET:  80%|████████  | 8/10 [00:00<00:00,  9.50it/s]
Processing NCOA4--RET:  90%|█████████ | 9/10 [00:00<00:00,  9.51it/s]
Processing SLC45A3--BRAF:  90%|█████████ | 9/10 [00:00<00:00,  9.51it/s]
Processing SLC45A3--BRAF: 100%|██████████| 10/10 [00:01<00:00,  9.52it/s]
Processing SLC45A3--BRAF: 100%|██████████| 10/10 [00:01<00:00,  9.46it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory