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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b9/14fe967752f1e0854e8d36375a0e1a/rna_s1221_S42_1_fastqc.zip
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b0/4c58d3693d8ae87778119bf8f15ad5/rna_s1200_S21.junction_annotation.log
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/3179db557cc4ed14081dac99ba734c/rna_s1200_S21_preseq_mqc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a5/4c39329818718682d35abd57c5d04a/rna_s1221_S42_trimmed_2_fastqc.zip
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8f/813d0e09a5cc2aa4cc025153ea8f14/rna_s1200_S21.inner_distance_freq.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/389664cf47d870b804a62956e9e16b/rna_s1221_S42_collectinsertsize.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ca/d96b2073b79c10281bf0a9c7efa452/rna_s1221_S42.pos.DupRate.xls
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/697bef0fcf896a9e5bfdc9991f9434/rna_s1221_S42_seqtool_mqc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f9/9d7abd5c6d7c2f2b415e9422992da1/rna_s1200_S21.md.bam.metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/tmp/3c/283ec019f640dab528645ba5747855/workflow_summary_mqc.yaml
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/06eb8c7b9a913591c9ac0d43de4822/rna_s1221_S42.read_distribution.txt
  Downloading: s3://natera-rnd-pltf-dev-s3-gitlab-results/rnafusion/build2756346/regression-run/62380552/pipeline_info/nf_core_pipeline_software_mqc_versions.yml
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e0/9f01d7e2a76c6f58d4647587542957/rna_s1221_S42.fastp.json
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/f5b8c22069112225ad9a3fbe1da899/rna_s1221_S42_contamination_mqc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/a4b2a35e4fd9b18831a13e8bc810dc/rna_s1200_S21_seqtool_mqc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/45/1e679b4261de67217000267525fe95/rna_s1221_S42.bam_stat.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/83/91498a48523c3b33208ec36ccfe597/rna_s1200_S21.read_distribution.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7b/5b6177267eb6c5e83e566e6b0f109a/rna_s1200_S21.pos.DupRate.xls
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c6/36cf1d69145e6f957c472e2471c2d0/rna_s1200_S21.junctionSaturation_plot.r
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/37/9050a31774ef07d02ec5a18b052249/rna_s1221_S42_rna_metrics.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/97/d0e4e6fc6e96097490cc5952505d4f/rna_s1200_S21.Log.final.out
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7d/51277018748d0f03b7aa417db7d9ed/rna_s1200_S21.lc_extrap.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cf/b824ada64cde86b458b29e32bbdcb5/rna_s1200_S21_combined_fusions_arriba_visualisation.pdf
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/0e6e62fdc30de214a113c6c3055dc7/rna_s1200_S21_trimmed_1_fastqc.zip
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/tmp/4d/63eaa9ebbfb6b59d3a7dbcd5ca1e18/methods_description_mqc.yaml
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/332d4fafe4065cafd3267180a9fca4/rna_s1200_S21.fastp.json
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/00/d7590505a5d9a223f7ad657ba8e20b/.command.run
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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b9/14fe967752f1e0854e8d36375a0e1a/rna_s1221_S42_2_fastqc.zip
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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e0/9f01d7e2a76c6f58d4647587542957/rna_s1221_S42.fastp.html
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fa/51eb6ac3cd0aad0ae206de29449d6a/rna_s1221_S42_kallisto_mqc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/fad4b9278fb146a32996fc4d45621a/rna_s1221_S42.ReadsPerGene.out.tab
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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/9134634462069d0d69b397161598aa/rna_s1221_S42_preseq_mqc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/fad4b9278fb146a32996fc4d45621a/rna_s1221_S42.Log.final.out
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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/14/c6af6bcadb7d5c0c3da29dbdc5e1eb/rna_s1200_S21_kallisto_mqc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/ed776455118ef28a81925e369183f9/rna_s1200_S21_2_fastqc.zip
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-a96df14d-d9d2-4aec-a036-bcc82f98afd5/25/b113a1885e39cb4fcd3020e54e14e6/multiqc_config.yml
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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/264daccd80a3ac9f4f5828d2a030df/rna_s1221_S42_combined_fusions_arriba_visualisation.pdf
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/6f2afb98e79c617eeed1e4debd55ae/rna_s1200_S21_collectinsertsize.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/12f35577545a3cd6cd976e5fd68e6f/rna_s1200_S21.bam_stat.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/4cac432d3c9df8f88227807aac16f5/rna_s1200_S21_contamination_mqc.tsv
==> STAGING COMPLETE (58 inputs)


  /// MultiQC 🔍 | v1.21

|           multiqc | MultiQC Version v1.35 now available!
|           multiqc | Module(s) in config.run_modules are unknown: arriba
|           multiqc | Only using modules: custom_content, fastqc, fastp, star, samtools, picard, kallisto, rseqc, preseq
|           multiqc | Search path : /tmp/nxf.zg4LSh6GPS
|         searching | ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 100% 91/91  
|    custom_content | preseq_metrics: Found 2 General Statistics columns
|    custom_content | seqtools_metrics: Found 2 General Statistics columns
|    custom_content | nf-core-rnafusion-summary: Found 1 sample (html)
|    custom_content | rna_contamination: Found 2 General Statistics columns
|    custom_content | nf-core-rnafusion-methods-description: Found 1 sample (html)
|    custom_content | kallisto_qc_metrics: Found 2 General Statistics columns
|          kallisto | Found 2 reports
|            picard | Found 2 InsertSizeMetrics reports
|            picard | Found 2 MarkDuplicates reports
|            picard | Found 2 RnaSeqMetrics reports
|            preseq | Found 2 reports
|             rseqc | Found 2 read_distribution reports
|             rseqc | Found 2 inner_distance reports
|             rseqc | Found 2 read_duplication reports
|             rseqc | Found 2 junction_annotation reports
|             rseqc | Found 2 junction_saturation reports
|             rseqc | Found 2 infer_experiment reports
|             rseqc | Found 2 bam_stat reports
|              star | Found 2 reports and 2 gene count files
|             fastp | Found 2 reports
|            fastqc | Found 8 reports
|            fastqc | Found 4 reports
|           multiqc | Report      : multiqc_report.html
|           multiqc | Data        : multiqc_data
|           multiqc | Plots       : multiqc_plots
|           multiqc | MultiQC complete