File Info

Filename
multiqc_data/multiqc_general_stats.txt
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/00/d7590505a5d9a223f7ad657ba8e20b/multiqc_data/multiqc_general_stats.txt
Size
7.3 KB
Task
NFCORE_RNAFUSION:RNAFUSION:MULTIQC
Attempt

Content

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Sample	Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads	Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct	Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads	Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped	Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes	Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads	Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target	Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target	Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target	Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target	Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target	Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target	Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target	Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target	Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth	Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth	Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x	Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x	Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30	Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias	Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated	Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct	Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean	Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median	Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts	Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts	Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts	Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts	Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm	Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm	Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm	Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm	Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median	Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean	Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION	Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES	Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES	RSeQC_mqc-generalstats-rseqc-proper_pairs_percent	STAR_mqc-generalstats-star-uniquely_mapped_percent	STAR_mqc-generalstats-star-uniquely_mapped	fastp_mqc-generalstats-fastp-pct_duplication	fastp_mqc-generalstats-fastp-after_filtering_q30_rate	fastp_mqc-generalstats-fastp-after_filtering_q30_bases	fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads	fastp_mqc-generalstats-fastp-after_filtering_gc_content	fastp_mqc-generalstats-fastp-pct_surviving	fastp_mqc-generalstats-fastp-pct_adapter	Kallisto_mqc-generalstats-kallisto-fragment_length	Kallisto_mqc-generalstats-kallisto-percent_aligned	Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads	FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates	FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc	FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length	FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length	FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails	FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences	FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates	FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc	FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length	FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length	FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails	FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences
rna_s1200_S21	9999000000.0	53979070.0	19875412.0	0.003853	0.183621	16225876.0	0.945347	0.972121	0.049933	0.027879	15339088.0	7832369.0	810206.0	224622.0	34.559207	5.0	0.293198	0.084685	0.985625	0.0	Skipped	N/A	181.3	167.0	0.0	4.58	2.97	0.0	0.0	10.9	3.44	0.0	294	762.227728	0.184331	0.0	96.3936	90.33600244662823	95.95	9534804.0	13.3191	0.984633	2750334612.0	19875412.0	0.535761	99.37706	32.738935000000005															
rna_s1200_S21_1																																																181.3	97.82623877180508	9721684.0	55.06766202745617	53.0	150.0	150	27.27272727272727	10000000.0						
rna_s1200_S21_2																																																			51.29223181161508	53.0	150.0	150	18.181818181818183	10000000.0						
rna_s1200_S21_trimmed_1																																																			55.15333452297679	53.0	140.52089164239715	150	18.181818181818183	9937706.0	55.15333452297679	53.0	140.52089164239715	150	18.181818181818183	9937706.0
rna_s1200_S21_trimmed_2																																																			51.418784339055215	53.0	140.53251514987463	150	9.090909090909092	9937706.0	51.418784339055215	53.0	140.53251514987463	150	9.090909090909092	9937706.0
rna_s1221_S42	9999000000.0	53000545.0	19864012.0	0.004391	0.198705	15916933.0	0.936077	0.962008	0.058443	0.037992	14899481.0	7595968.0	930229.0	299983.0	32.870035	5.0	0.28172	0.079333	0.98502	0.0	Skipped	N/A	175.6	161.0	0.01	4.71	2.83	0.0	0.01	11.32	3.19	0.0	255	661.011966	0.199581	0.0873	95.2555	80.25001383886074	94.32	9368114.0	13.947899999999999	0.983893	2705779238.0	19864012.0	0.533166	99.32006	36.832589999999996															
rna_s1221_S42_1																																																175.6	96.36796433671103	9571272.0	58.127453358315755	52.0	150.0	150	27.27272727272727	10000000.0						
rna_s1221_S42_2																																																			52.35146639744933	53.0	150.0	150	18.181818181818183	10000000.0						
rna_s1221_S42_trimmed_1																																																			58.214931277870946	53.0	138.4228959386452	150	18.181818181818183	9932006.0	58.214931277870946	53.0	138.4228959386452	150	18.181818181818183	9932006.0
rna_s1221_S42_trimmed_2																																																			52.464963982921226	53.0	138.44541374622608	150	9.090909090909092	9932006.0	52.464963982921226	53.0	138.44541374622608	150	9.090909090909092	9932006.0