Module Section Sample Name Source
Kallisto all_sections rna_s1221_S42_1 /tmp/nxf.zg4LSh6GPS/16/rna_s1221_S42.log
Kallisto all_sections rna_s1200_S21_1 /tmp/nxf.zg4LSh6GPS/15/rna_s1200_S21.log
Picard InsertSizeMetrics rna_s1221_S42 /tmp/nxf.zg4LSh6GPS/24/rna_s1221_S42_collectinsertsize.txt
Picard InsertSizeMetrics rna_s1200_S21 /tmp/nxf.zg4LSh6GPS/23/rna_s1200_S21_collectinsertsize.txt
Picard DuplicationMetrics rna_s1200_S21 /tmp/nxf.zg4LSh6GPS/41/rna_s1200_S21.md.bam.metrics
Picard DuplicationMetrics rna_s1221_S42 /tmp/nxf.zg4LSh6GPS/42/rna_s1221_S42.md.bam.metrics
Picard RnaSeqMetrics rna_s1221_S42 /tmp/nxf.zg4LSh6GPS/50/rna_s1221_S42_rna_metrics.txt
Picard RnaSeqMetrics rna_s1200_S21 /tmp/nxf.zg4LSh6GPS/49/rna_s1200_S21_rna_metrics.txt
Preseq all_sections rna_s1200_S21.lc_extrap /tmp/nxf.zg4LSh6GPS/25/rna_s1200_S21.lc_extrap.txt
Preseq all_sections rna_s1221_S42.lc_extrap /tmp/nxf.zg4LSh6GPS/26/rna_s1221_S42.lc_extrap.txt
RSeQC read_distribution rna_s1221_S42 /tmp/nxf.zg4LSh6GPS/44/rna_s1221_S42.read_distribution.txt
RSeQC read_distribution rna_s1200_S21 /tmp/nxf.zg4LSh6GPS/43/rna_s1200_S21.read_distribution.txt
RSeQC inner_distance rna_s1200_S21 /tmp/nxf.zg4LSh6GPS/33/rna_s1200_S21.inner_distance_freq.txt
RSeQC inner_distance rna_s1221_S42 /tmp/nxf.zg4LSh6GPS/34/rna_s1221_S42.inner_distance_freq.txt
RSeQC read_duplication rna_s1221_S42 /tmp/nxf.zg4LSh6GPS/46/rna_s1221_S42.pos.DupRate.xls
RSeQC read_duplication rna_s1200_S21 /tmp/nxf.zg4LSh6GPS/45/rna_s1200_S21.pos.DupRate.xls
RSeQC junction_annotation rna_s1200_S21 /tmp/nxf.zg4LSh6GPS/39/rna_s1200_S21.junction_annotation.log
RSeQC junction_annotation rna_s1221_S42 /tmp/nxf.zg4LSh6GPS/40/rna_s1221_S42.junction_annotation.log
RSeQC junction_saturation rna_s1200_S21 /tmp/nxf.zg4LSh6GPS/35/rna_s1200_S21.junctionSaturation_plot.r
RSeQC junction_saturation rna_s1221_S42 /tmp/nxf.zg4LSh6GPS/36/rna_s1221_S42.junctionSaturation_plot.r
RSeQC infer_experiment rna_s1221_S42 /tmp/nxf.zg4LSh6GPS/38/rna_s1221_S42.infer_experiment.txt
RSeQC infer_experiment rna_s1200_S21 /tmp/nxf.zg4LSh6GPS/37/rna_s1200_S21.infer_experiment.txt
RSeQC bam_stat rna_s1221_S42 /tmp/nxf.zg4LSh6GPS/30/rna_s1221_S42.bam_stat.txt
RSeQC bam_stat rna_s1200_S21 /tmp/nxf.zg4LSh6GPS/29/rna_s1200_S21.bam_stat.txt
STAR SummaryLog rna_s1200_S21 /tmp/nxf.zg4LSh6GPS/19/rna_s1200_S21.Log.final.out
STAR SummaryLog rna_s1221_S42 /tmp/nxf.zg4LSh6GPS/20/rna_s1221_S42.Log.final.out
STAR ReadsPerGene rna_s1221_S42 /tmp/nxf.zg4LSh6GPS/22/rna_s1221_S42.ReadsPerGene.out.tab
STAR ReadsPerGene rna_s1200_S21 /tmp/nxf.zg4LSh6GPS/21/rna_s1200_S21.ReadsPerGene.out.tab
fastp all_sections rna_s1221_S42 /tmp/nxf.zg4LSh6GPS/4/rna_s1221_S42.fastp.json
fastp all_sections rna_s1200_S21 /tmp/nxf.zg4LSh6GPS/3/rna_s1200_S21.fastp.json
FastQC (raw) all_sections rna_s1221_S42_1 /tmp/nxf.zg4LSh6GPS/7/rna_s1221_S42_1_fastqc.zip
FastQC (raw) all_sections rna_s1221_S42_trimmed_2 /tmp/nxf.zg4LSh6GPS/12/rna_s1221_S42_trimmed_2_fastqc.zip
FastQC (raw) all_sections rna_s1200_S21_trimmed_1 /tmp/nxf.zg4LSh6GPS/13/rna_s1200_S21_trimmed_1_fastqc.zip
FastQC (raw) all_sections rna_s1221_S42_2 /tmp/nxf.zg4LSh6GPS/8/rna_s1221_S42_2_fastqc.zip
FastQC (raw) all_sections rna_s1221_S42_trimmed_1 /tmp/nxf.zg4LSh6GPS/11/rna_s1221_S42_trimmed_1_fastqc.zip
FastQC (raw) all_sections rna_s1200_S21_1 /tmp/nxf.zg4LSh6GPS/9/rna_s1200_S21_1_fastqc.zip
FastQC (raw) all_sections rna_s1200_S21_trimmed_2 /tmp/nxf.zg4LSh6GPS/14/rna_s1200_S21_trimmed_2_fastqc.zip
FastQC (raw) all_sections rna_s1200_S21_2 /tmp/nxf.zg4LSh6GPS/10/rna_s1200_S21_2_fastqc.zip
FastQC (trimmed) all_sections rna_s1221_S42_trimmed_2 /tmp/nxf.zg4LSh6GPS/12/rna_s1221_S42_trimmed_2_fastqc.zip
FastQC (trimmed) all_sections rna_s1200_S21_trimmed_1 /tmp/nxf.zg4LSh6GPS/13/rna_s1200_S21_trimmed_1_fastqc.zip
FastQC (trimmed) all_sections rna_s1221_S42_trimmed_1 /tmp/nxf.zg4LSh6GPS/11/rna_s1221_S42_trimmed_1_fastqc.zip
FastQC (trimmed) all_sections rna_s1200_S21_trimmed_2 /tmp/nxf.zg4LSh6GPS/14/rna_s1200_S21_trimmed_2_fastqc.zip