Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/17ee8c9b4ee94aad9e3d55f9d7490f/rna_s1221_S42.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/b60a34063919633b75d5228c6149fd/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/b60a34063919633b75d5228c6149fd/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/78ab7d12833f0ac292e68df2fea46d/rna_s1221_S42.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: rna_s1221_S42.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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