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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/93/5f5dc6258800a57e2b7b4d42a1da67/rna_s1200_S21.junction_annotation.log
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/a44ebf329815b77bfcdf7efc34ba25/rna_s1221_S42_trimmed_2_fastqc.zip
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/be/73c7e9cf12d8e4e3417c50bef76773/rna_s1200_S21.inner_distance_freq.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7e/06c5423b1f45051d87ad27845d475f/rna_s1200_S21.fastp.json
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/c977f2fb8b9ba36c73c66c68256a54/rna_s1221_S42_collectinsertsize.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ca/906993707481b7742025a8ffda95df/rna_s1200_S21.lc_extrap.txt
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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ca/906993707481b7742025a8ffda95df/rna_s1200_S21.attempt1.command.log
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/aeec37620b711a37c17ba3c14ff1f3/rna_s1221_S42.junctionSaturation_plot.r
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/tmp/e7/963af27e94e6ae5d954d925d37daac/workflow_summary_mqc.yaml
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/1e213b0ca01818fdc395cb8a38fdb4/rna_s1221_S42.read_distribution.txt
  Downloading: s3://natera-rnd-pltf-dev-s3-gitlab-results/rnafusion/build2759217/baseline-run/62472940/pipeline_info/nf_core_pipeline_software_mqc_versions.yml
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/bbbc1444982b6eda0972e113b118ff/rna_s1221_S42.attempt1.command.log
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/edf3c6b9ba8a29d8b1c59acd6218a3/rna_s1221_S42_kallisto_mqc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a6/2b8d9ffb4680324a9fcad7ae044727/rna_s1221_S42_contamination_mqc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/69/fb7a79fc06a9cfc7545443750b81c7/rna_s1200_S21_seqtool_mqc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c6/cefc71ba4ec24e6cb768dfa84e46a7/rna_s1221_S42.bam_stat.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/d233c2bb11a1c541b8fd9c69a830c4/rna_s1200_S21.read_distribution.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/b60a34063919633b75d5228c6149fd/rna_s1221_S42.pos.DupRate.xls
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c1/4c2e7e617359a2c6f2b5010c9c6a5c/rna_s1200_S21.Log.final.out
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/5aa35514d8699443dfc2fbb37f08f2/rna_s1221_S42.infer_experiment.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cf/d696ff6932559540ebc80efea19ba5/rna_s1200_S21_rna_metrics.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/5d0956d10d250aa685130727be12de/rna_s1200_S21_combined_fusions_arriba_visualisation.pdf
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/65/f9c6065322f936d609e0b2e091331a/rna_s1200_S21_trimmed_1_fastqc.zip
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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8c/058b833ca8b5d6f541da0b1e3b11fe/rna_s1200_S21_contamination_mqc.tsv
==> STAGING COMPLETE (58 inputs)


  /// MultiQC 🔍 | v1.21

|           multiqc | MultiQC Version v1.35 now available!
|           multiqc | Module(s) in config.run_modules are unknown: arriba
|           multiqc | Only using modules: custom_content, fastqc, fastp, star, samtools, picard, kallisto, rseqc, preseq
|           multiqc | Search path : /tmp/nxf.sg0lKrrfK9
|         searching | ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 100% 91/91  
|    custom_content | seqtools_metrics: Found 2 General Statistics columns
|    custom_content | nf-core-rnafusion-summary: Found 1 sample (html)
|    custom_content | kallisto_qc_metrics: Found 2 General Statistics columns
|    custom_content | rna_contamination: Found 2 General Statistics columns
|    custom_content | nf-core-rnafusion-methods-description: Found 1 sample (html)
|    custom_content | preseq_metrics: Found 2 General Statistics columns
|          kallisto | Found 2 reports
|            picard | Found 2 InsertSizeMetrics reports
|            picard | Found 2 MarkDuplicates reports
|            picard | Found 2 RnaSeqMetrics reports
|            preseq | Found 2 reports
|             rseqc | Found 2 read_distribution reports
|             rseqc | Found 2 inner_distance reports
|             rseqc | Found 2 read_duplication reports
|             rseqc | Found 2 junction_annotation reports
|             rseqc | Found 2 junction_saturation reports
|             rseqc | Found 2 infer_experiment reports
|             rseqc | Found 2 bam_stat reports
|              star | Found 2 reports and 2 gene count files
|             fastp | Found 2 reports
|            fastqc | Found 8 reports
|            fastqc | Found 4 reports
|           multiqc | Report      : multiqc_report.html
|           multiqc | Data        : multiqc_data
|           multiqc | Plots       : multiqc_plots
|           multiqc | MultiQC complete