File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/be/dfd4a0cf51df93d4a7b513a0985653/.command.log
Size
2.2 KB
Task
NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:FLOWCELL_QC (REGRESSION)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cf/ee5d2e64f631a78e5b9e258c7ff1dc/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cf/ee5d2e64f631a78e5b9e258c7ff1dc/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cf/ee5d2e64f631a78e5b9e258c7ff1dc/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/1726f03c693b0ab908a0de86867975/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/61/dde03e097b5a047d2824d0cb4a7fb5/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/1726f03c693b0ab908a0de86867975/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/61/dde03e097b5a047d2824d0cb4a7fb5/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/be/dfd4a0cf51df93d4a7b513a0985653/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cf/46e9a05654f9b1586914d58cf74572/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cf/46e9a05654f9b1586914d58cf74572/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/1726f03c693b0ab908a0de86867975/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/be/dfd4a0cf51df93d4a7b513a0985653/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-inputs/test_rnafusion/e2e_regression_bcl/rundir/RunInfo.xml
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cf/46e9a05654f9b1586914d58cf74572/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/61/dde03e097b5a047d2824d0cb4a7fb5/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-platform-sandbox/pipeline-inputs/test_rnafusion/e2e_regression_bcl/rundir/InterOp/TileMetricsOut.bin
==> STAGING COMPLETE (16 inputs)

INFO: InterOp files not provided, InterOp metrics will be null
Wrote flowcell_qc.csv with 7/13 metrics populated