File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/30/b9ebec993a969cdbea2f34afc57e9f/.command.log
Size
922 bytes
Task
NFCORE_RNAFUSION:RNAFUSION:KALLISTO_TO_MULTIQC (rna_s1200_S21)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6a/450160fe034b639896abe9340893b4/rna_s1200_S21
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/30/b9ebec993a969cdbea2f34afc57e9f/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/34aa9962757a04d68817badf4cc432/rna_s1200_S21.sample_qc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/30/b9ebec993a969cdbea2f34afc57e9f/.command.run
==> STAGING COMPLETE (4 inputs)

Processing Kallisto file: rna_s1200_S21/abundance.h5
Successfully converted rna_s1200_S21/abundance.h5 to rna_s1200_S21_kallisto_mqc.tsv
  Sample: rna_s1200_S21
  Mean Fragment Length: 180.9 bp
  Median Fragment Length: 166.0 bp
  pct_mito_est_counts: 0.0%
  pct_ribo_est_counts: 4.58%
  pct_hk_est_counts: 2.97%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.0%
  pct_ribo_tpm: 10.89%
  pct_hk_tpm: 3.45%
  pct_male_tpm: 0.0%