.command.log - Workdir - NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_JUNCTIONANNOTATION (rna_s1221_S42)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5a/e90d91d2d3a65f03f1f68c9828300a/.command.log
Size: 1.4 KB
Task: NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_JUNCTIONANNOTATION (rna_s1221_S42)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7f/c7b2e2a855df39ae1448bba993a256/rna_s1221_S42.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3d/2685a0cad37f71d2dcd023e3833915/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5a/e90d91d2d3a65f03f1f68c9828300a/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5a/e90d91d2d3a65f03f1f68c9828300a/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/7a0d41f32cf8151d25c77b4b0ffdd7/rna_s1221_S42.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 11219780
[W::hts_idx_load3] The index file is older than the data file: rna_s1221_S42.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	11219780
Known Splicing Events:	11135135
Partial Novel Splicing Events:	59248
Novel Splicing Events:	23159
Filtered Splicing Events:	2238

Total splicing  Junctions:	175854
Known Splicing Junctions:	148597
Partial Novel Splicing Junctions:	21832
Novel Splicing Junctions:	5425

===================================================================
Create BED file ...
Create Interact file ...