File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fa/de5f4d8d11fe3700ec4774d9cbcb97/.command.log
Size
968 bytes
Task
NFCORE_RNAFUSION:RNAFUSION:KALLISTO_TO_MULTIQC (rna_s1221_S42)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fa/de5f4d8d11fe3700ec4774d9cbcb97/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fa/de5f4d8d11fe3700ec4774d9cbcb97/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/75/9e3f98c3f390e5916e3b8304504028/rna_s1221_S42.sample_qc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/9ac8223a4e2ebed25df68a2a7532df/rna_s1221_S42
==> STAGING COMPLETE (4 inputs)

Processing Kallisto file: rna_s1221_S42/abundance.h5
Successfully converted rna_s1221_S42/abundance.h5 to rna_s1221_S42_kallisto_mqc.tsv
  Sample: rna_s1221_S42
  Mean Fragment Length: 175.5 bp
  Median Fragment Length: 161.0 bp
  pct_mito_est_counts: 0.01%
  pct_ribo_est_counts: 4.71%
  pct_hk_est_counts: 2.83%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.01%
  pct_ribo_tpm: 11.32%
  pct_hk_tpm: 3.19%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 6.77%