Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/3a770d629a01ae2859a33b55ee2b45/rna_s1221_S42.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/46bd2e9e744333815ad8c35592f928/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/46bd2e9e744333815ad8c35592f928/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/76/2bd2c793c5591a9c9f87bd4f0439c4/rna_s1221_S42.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: rna_s1221_S42.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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