File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/07/5febc209a935af9912407ac0e38f68/.command.log
Size
2.2 KB
Task
NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:FLOWCELL_QC (REGRESSION)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/fe3649df2abae40cd92e85ca3baea5/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/fe3649df2abae40cd92e85ca3baea5/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/fe3649df2abae40cd92e85ca3baea5/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/7c57fdbba593bc40d78a5f2bed4f71/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/db4b4ee68a7b1a12e7a4802edd6ff9/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/7c57fdbba593bc40d78a5f2bed4f71/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/db4b4ee68a7b1a12e7a4802edd6ff9/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/07/5febc209a935af9912407ac0e38f68/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/663415c47315ef183d4834e8b78585/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/663415c47315ef183d4834e8b78585/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/7c57fdbba593bc40d78a5f2bed4f71/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/07/5febc209a935af9912407ac0e38f68/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-inputs/test_rnafusion/e2e_regression_bcl/rundir/RunInfo.xml
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/663415c47315ef183d4834e8b78585/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/db4b4ee68a7b1a12e7a4802edd6ff9/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-platform-sandbox/pipeline-inputs/test_rnafusion/e2e_regression_bcl/rundir/InterOp/TileMetricsOut.bin
==> STAGING COMPLETE (16 inputs)

INFO: InterOp files not provided, InterOp metrics will be null
Wrote flowcell_qc.csv with 7/13 metrics populated