File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/25/50ce8f0641b2268aa03459d68f4926/.command.log
Size
2.2 KB
Task
NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:FLOWCELL_QC (REGRESSION)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/86e3a43a4c0ea9c37815d308835f1b/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/86e3a43a4c0ea9c37815d308835f1b/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/86e3a43a4c0ea9c37815d308835f1b/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/34/3373c18a202ad8a0c8bcd37e18fb6c/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/df/a4cc8a5d76b41c136ea68bb12f2a51/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/34/3373c18a202ad8a0c8bcd37e18fb6c/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/df/a4cc8a5d76b41c136ea68bb12f2a51/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/25/50ce8f0641b2268aa03459d68f4926/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/08/f91d8a97b5ea8b285047a9b248a364/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/08/f91d8a97b5ea8b285047a9b248a364/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/34/3373c18a202ad8a0c8bcd37e18fb6c/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/25/50ce8f0641b2268aa03459d68f4926/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/08/f91d8a97b5ea8b285047a9b248a364/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-platform-sandbox/pipeline-inputs/test_rnafusion/e2e_regression_bcl/rundir/RunInfo.xml
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/df/a4cc8a5d76b41c136ea68bb12f2a51/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-platform-sandbox/pipeline-inputs/test_rnafusion/e2e_regression_bcl/rundir/InterOp/TileMetricsOut.bin
==> STAGING COMPLETE (16 inputs)

INFO: InterOp files not provided, InterOp metrics will be null
Wrote flowcell_qc.csv with 7/13 metrics populated