.command.log - Workdir - NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_READDUPLICATION (rna_s1221_S42)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/e7e3de8b0a2250d0558c815c05f9c6/.command.log
Size: 815 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_READDUPLICATION (rna_s1221_S42)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/94/e823d3e2f87457d6b4cffb7d23e96a/rna_s1221_S42.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/e7e3de8b0a2250d0558c815c05f9c6/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/e7e3de8b0a2250d0558c815c05f9c6/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/516273de74265183326a49ca3187b4/rna_s1221_S42.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: rna_s1221_S42.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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