.command.err - Workdir - NFCORE_RNAFUSION:RNAFUSION:KALLISTO_TO_MULTIQC (rna_s1221_S42)

File Info

Filename: .command.err
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cf/c0be0ab88d4a81f1d0d8f689a5e76f/.command.err
Size: 472 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:KALLISTO_TO_MULTIQC (rna_s1221_S42)
Attempt

Content

Processing Kallisto file: rna_s1221_S42/abundance.h5
Successfully converted rna_s1221_S42/abundance.h5 to rna_s1221_S42_kallisto_mqc.tsv
  Sample: rna_s1221_S42
  Mean Fragment Length: 175.4 bp
  Median Fragment Length: 161.0 bp
  pct_mito_est_counts: 0.01%
  pct_ribo_est_counts: 4.71%
  pct_hk_est_counts: 2.83%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.01%
  pct_ribo_tpm: 11.32%
  pct_hk_tpm: 3.19%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 6.77%