Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/c5ced7132b69d0f15416bf52fc1eba/rna_s1221_S42.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e6/c4bb2756d58e044bf3149cb4a5e54e/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/9dfd395c1fdbc5175375049f1db5dc/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/9dfd395c1fdbc5175375049f1db5dc/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/43/580de613c121658fa1e5ecbf0f7056/rna_s1221_S42.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 11219780
[W::hts_idx_load3] The index file is older than the data file: rna_s1221_S42.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	11219780
Known Splicing Events:	11135135
Partial Novel Splicing Events:	59248
Novel Splicing Events:	23159
Filtered Splicing Events:	2238

Total splicing  Junctions:	175854
Known Splicing Junctions:	148597
Partial Novel Splicing Junctions:	21832
Novel Splicing Junctions:	5425

===================================================================
Create BED file ...
Create Interact file ...