File Info

Filename
output/Logs/Info.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/efc29fcfc71e3bcdb40a348d6ada42/output/Logs/Info.log
Size
2.8 KB
Attempt
2026-05-28T16:26:16Z thread 367 Sample sheet being processed by common lib? Yes
2026-05-28T16:26:16Z thread 367 SampleSheet Settings: 
2026-05-28T16:26:16Z thread 367   OverrideCycles = Y150;I8;I8;Y150
2026-05-28T16:26:16Z thread 367 
2026-05-28T16:26:16Z thread 367 shared-thread-linux-native-asio output is disabled
2026-05-28T16:26:16Z thread 367 bcl-convert Version 4.4.6
2026-05-28T16:26:16Z thread 367 Copyright (c) 2014-2025 Illumina, Inc.
2026-05-28T16:26:16Z thread 367 Command Line: --tiles s_1 --output-directory output --bcl-input-directory rundir --sample-sheet SampleSheet.csv 
2026-05-28T16:26:16Z thread 367 Conversion Begins.
2026-05-28T16:26:16Z thread 367 Input BCL Information:
2026-05-28T16:26:16Z thread 367     Read Structure: 2026-05-28T16:26:16Z thread 367 Y1502026-05-28T16:26:16Z thread 367 ;2026-05-28T16:26:16Z thread 367 I82026-05-28T16:26:16Z thread 367 ;2026-05-28T16:26:16Z thread 367 I82026-05-28T16:26:16Z thread 367 ;2026-05-28T16:26:16Z thread 367 Y1502026-05-28T16:26:16Z thread 367 
2026-05-28T16:26:16Z thread 367     RunInfo.xml file lists: 4 lanes, 4 tiles
2026-05-28T16:26:16Z thread 367     BCL file format: bcl.gz
2026-05-28T16:26:16Z thread 367     Positions file format: locs
2026-05-28T16:26:16Z thread 367     Filter file format: filter
2026-05-28T16:26:16Z thread 367 Conversion Information:
2026-05-28T16:26:16Z thread 367     Tile filtering: converting 1/4 tiles
2026-05-28T16:26:16Z thread 367     Lane 2 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-05-28T16:26:16Z thread 367     Lane 3 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-05-28T16:26:16Z thread 367     Lane 4 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-05-28T16:26:16Z thread 367     Sample Count: 2
2026-05-28T16:26:16Z thread 367     Expected number of sample FASTQ files to be created: 4
2026-05-28T16:26:16Z thread 367 # CPU hw threads available: 64
2026-05-28T16:26:16Z thread 367 Parallel Tiles: 4. Threads Per Tile: 16
2026-05-28T16:26:16Z thread 367 SW compressors: 64
2026-05-28T16:26:16Z thread 367 SW decompressors: 32
2026-05-28T16:26:16Z thread 367 SW FASTQ compression level: 1
2026-05-28T16:26:18Z thread 367 Lane 1 Post-run Information:
2026-05-28T16:26:18Z thread 367     Total clusters: 5000000
2026-05-28T16:26:18Z thread 367     Total Genomic Reads: 10000000
2026-05-28T16:26:18Z thread 367     Total Genomic Input Gigabases 1.50
2026-05-28T16:26:18Z thread 367     Minimum reads for a sample: 4999006
2026-05-28T16:26:18Z thread 367     Maximum reads for a sample: 5000994
2026-05-28T16:26:18Z thread 367     Average reads per sample: 5000000.00
2026-05-28T16:26:18Z thread 367     Undetermined reads: 0
2026-05-28T16:26:19Z thread 367 Conversion Complete.