Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7e/e2b3e61cdcb7149d972ac899ad7d1e/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/03/58c681ed7b8e293ceeff5d315d0678/rna_s1221_S42.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7e/e2b3e61cdcb7149d972ac899ad7d1e/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.csi: No such file or directory
ls: *.crai: No such file or directory