Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/dc4e182bbd6e0eae8c96afab6b557c/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/dc4e182bbd6e0eae8c96afab6b557c/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/80/884c42994cf4ec329ed30e2b633151/rna_s1200_S21.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/34/2f10582b77f12da0edcf6cc7ca9407/rna_s1200_S21.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: rna_s1200_S21.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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