Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/da8ac9af23defcefd6d9959473cdd3/rna_s1221_S42.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b4/7fdf5125336594fa909fe1b7cdf969/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/be/4ddb9fc265422ad42309e1c3a70ec5/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/be/4ddb9fc265422ad42309e1c3a70ec5/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/2804a108bad3deb4e81e4af46d96e6/rna_s1221_S42.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 11219780
[W::hts_idx_load3] The index file is older than the data file: rna_s1221_S42.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	11219780
Known Splicing Events:	11135135
Partial Novel Splicing Events:	59248
Novel Splicing Events:	23159
Filtered Splicing Events:	2238

Total splicing  Junctions:	175854
Known Splicing Junctions:	148597
Partial Novel Splicing Junctions:	21832
Novel Splicing Junctions:	5425

===================================================================
Create BED file ...
Create Interact file ...