File Info

Filename
output/Logs/Info.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/45/cf98717d29a710cf300c8dbb88a1d5/output/Logs/Info.log
Size
2.8 KB
Attempt
2026-05-29T18:18:54Z thread 343 Sample sheet being processed by common lib? Yes
2026-05-29T18:18:54Z thread 343 SampleSheet Settings: 
2026-05-29T18:18:54Z thread 343   OverrideCycles = Y150;I8;I8;Y150
2026-05-29T18:18:54Z thread 343 
2026-05-29T18:18:54Z thread 343 shared-thread-linux-native-asio output is disabled
2026-05-29T18:18:54Z thread 343 bcl-convert Version 4.4.6
2026-05-29T18:18:54Z thread 343 Copyright (c) 2014-2025 Illumina, Inc.
2026-05-29T18:18:54Z thread 343 Command Line: --tiles s_2 --output-directory output --bcl-input-directory rundir --sample-sheet SampleSheet.csv 
2026-05-29T18:18:54Z thread 343 Conversion Begins.
2026-05-29T18:18:54Z thread 343 Input BCL Information:
2026-05-29T18:18:54Z thread 343     Read Structure: 2026-05-29T18:18:54Z thread 343 Y1502026-05-29T18:18:54Z thread 343 ;2026-05-29T18:18:54Z thread 343 I82026-05-29T18:18:54Z thread 343 ;2026-05-29T18:18:54Z thread 343 I82026-05-29T18:18:54Z thread 343 ;2026-05-29T18:18:54Z thread 343 Y1502026-05-29T18:18:54Z thread 343 
2026-05-29T18:18:54Z thread 343     RunInfo.xml file lists: 4 lanes, 4 tiles
2026-05-29T18:18:54Z thread 343     BCL file format: bcl.gz
2026-05-29T18:18:54Z thread 343     Positions file format: locs
2026-05-29T18:18:54Z thread 343     Filter file format: filter
2026-05-29T18:18:54Z thread 343 Conversion Information:
2026-05-29T18:18:54Z thread 343     Tile filtering: converting 1/4 tiles
2026-05-29T18:18:54Z thread 343     Lane 1 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-05-29T18:18:54Z thread 343     Lane 3 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-05-29T18:18:54Z thread 343     Lane 4 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-05-29T18:18:54Z thread 343     Sample Count: 2
2026-05-29T18:18:54Z thread 343     Expected number of sample FASTQ files to be created: 4
2026-05-29T18:18:54Z thread 343 # CPU hw threads available: 64
2026-05-29T18:18:54Z thread 343 Parallel Tiles: 4. Threads Per Tile: 16
2026-05-29T18:18:54Z thread 343 SW compressors: 64
2026-05-29T18:18:54Z thread 343 SW decompressors: 32
2026-05-29T18:18:54Z thread 343 SW FASTQ compression level: 1
2026-05-29T18:18:57Z thread 343 Lane 2 Post-run Information:
2026-05-29T18:18:57Z thread 343     Total clusters: 5000000
2026-05-29T18:18:57Z thread 343     Total Genomic Reads: 10000000
2026-05-29T18:18:57Z thread 343     Total Genomic Input Gigabases 1.50
2026-05-29T18:18:57Z thread 343     Minimum reads for a sample: 4999236
2026-05-29T18:18:57Z thread 343     Maximum reads for a sample: 5000764
2026-05-29T18:18:57Z thread 343     Average reads per sample: 5000000.00
2026-05-29T18:18:57Z thread 343     Undetermined reads: 0
2026-05-29T18:18:57Z thread 343 Conversion Complete.