.command.err - Workdir - NFCORE_RNAFUSION:RNAFUSION:KALLISTO_TO_MULTIQC (rna_s1200_S21)

File Info

Filename: .command.err
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/be/6f17bbb2b29131e3f71d45d5bf42f6/.command.err
Size: 469 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:KALLISTO_TO_MULTIQC (rna_s1200_S21)
Attempt

Content

Processing Kallisto file: rna_s1200_S21/abundance.h5
Successfully converted rna_s1200_S21/abundance.h5 to rna_s1200_S21_kallisto_mqc.tsv
  Sample: rna_s1200_S21
  Mean Fragment Length: 181.2 bp
  Median Fragment Length: 166.0 bp
  pct_mito_est_counts: 0.0%
  pct_ribo_est_counts: 4.58%
  pct_hk_est_counts: 2.97%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.0%
  pct_ribo_tpm: 10.89%
  pct_hk_tpm: 3.45%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 6.7%