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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5e/2439ed401d24914519c824b45dab3c/rna_s1200_S21_rseqc_extra_mqc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/af/c2dda9487b5f9ff6bb69ffa1eba5df/rna_s1221_S42.read_distribution.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/33/2a80749a3be17ddf586c186ba8837b/rna_s1221_S42_collectinsertsize.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/d3083eb13a91ae8df2377755c0c8ac/rna_s1200_S21.lc_extrap.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/78/d10193dc58ec5a829fec16742414d4/rna_s1221_S42.inner_distance_freq.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/1a20cda5f1b4bbc36883bdd78b172a/rna_s1221_S42_combined_fusions_arriba_visualisation.pdf
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8f/afcb9226d45501011e372a64aceb61/rna_s1221_S42_seqtool_mqc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/74/e0825766bc2277915908562babc8fe/rna_s1221_S42_rseqc_extra_mqc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/d3083eb13a91ae8df2377755c0c8ac/rna_s1200_S21.attempt1.command.log
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/tmp/57/41fe293200ae3bcc525df64ab9301a/workflow_summary_mqc.yaml
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cf/88bda1dd959c27b751aae631a8aca7/rna_s1200_S21.inner_distance_freq.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/57fbd4e671b294b3066196ee98291a/rna_s1221_S42.junctionSaturation_plot.r
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/28f91f25a2996ee6738ab3b9b43e99/rna_s1221_S42.md.bam.metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/88/1a1225eeab9288efc4c7de7e6870a7/rna_s1221_S42.fastp.json
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/39/f992c3c2b9e6d592804ee57f47a4a9/rna_s1221_S42_trimmed_1_fastqc.zip
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f9/939d7dbfb24baef89da26f2fd61d3e/rna_s1221_S42.attempt1.command.log
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/34a31497e7cd9c952468010909ae1d/rna_s1200_S21_seqtool_mqc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/28/8f53418a3c8cdd297c90e9e0c9ac7e/rna_s1221_S42_1_fastqc.zip
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/5d1de26fca3cdb8e4c9e69705d33e2/rna_s1200_S21_trimmed_2_fastqc.zip
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/2a3346d716f2e07e341c9c09c16132/rna_s1200_S21.Log.final.out
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/4bc92a8bb622fb70ad7128ac0ec3aa/rna_s1221_S42_preseq_mqc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1e/5c7f574680f5840141b52c43b3952a/rna_s1200_S21.infer_experiment.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c9/20655bbcbab2751c5f1b1d99be4fd7/rna_s1221_S42.junction_annotation.log
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/d87a70c7ab865443d348917e440c7a/rna_s1200_S21_rna_metrics.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/tmp/a6/2fbc94a4936e6f16878824d0e5244c/methods_description_mqc.yaml
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/89/cba75e49cca485b75663b04e58d839/.command.run
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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/88/63b5effb1303c694fffa37347fd543/rna_s1200_S21_1_fastqc.zip
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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/79/299a2d3820261ccb72f7833d9cce6c/rna_s1221_S42_kallisto_mqc.tsv
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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/2a3346d716f2e07e341c9c09c16132/rna_s1200_S21.ReadsPerGene.out.tab
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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/9634ad13e1bf339134f4bcbf2039a6/rna_s1221_S42.log
==> STAGING COMPLETE (60 inputs)


  /// MultiQC 🔍 | v1.21

|           multiqc | MultiQC Version v1.35 now available!
|           multiqc | Module(s) in config.run_modules are unknown: arriba
|           multiqc | Only using modules: custom_content, fastqc, fastp, star, samtools, picard, kallisto, rseqc, preseq
|           multiqc | Search path : /tmp/nxf.oAQ1U6uM9g
|         searching | ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 100% 95/95  
|    custom_content | rseqc_extra_metrics: Found 2 General Statistics columns
|    custom_content | seqtools_metrics: Found 2 General Statistics columns
|    custom_content | nf-core-rnafusion-summary: Found 1 sample (html)
|    custom_content | preseq_metrics: Found 2 General Statistics columns
|    custom_content | nf-core-rnafusion-methods-description: Found 1 sample (html)
|    custom_content | kallisto_qc_metrics: Found 2 General Statistics columns
|    custom_content | rna_contamination: Found 2 General Statistics columns
|          kallisto | Found 2 reports
|            picard | Found 2 InsertSizeMetrics reports
|            picard | Found 2 MarkDuplicates reports
|            picard | Found 2 RnaSeqMetrics reports
|            preseq | Found 2 reports
|             rseqc | Found 2 read_distribution reports
|             rseqc | Found 2 inner_distance reports
|             rseqc | Found 2 read_duplication reports
|             rseqc | Found 2 junction_annotation reports
|             rseqc | Found 2 junction_saturation reports
|             rseqc | Found 2 infer_experiment reports
|             rseqc | Found 2 bam_stat reports
|              star | Found 2 reports and 2 gene count files
|             fastp | Found 2 reports
|            fastqc | Found 8 reports
|            fastqc | Found 4 reports
|           multiqc | Report      : multiqc_report.html
|           multiqc | Data        : multiqc_data
|           multiqc | Plots       : multiqc_plots
|           multiqc | MultiQC complete