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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cf/6450cd7b746de73eca9025baff7119/rna_s1200_S21.lc_extrap.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/c821ed7287fe6bddc509275679c321/rna_s1221_S42.junctionSaturation_plot.r
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/tmp/3d/8baee43434b800950013ea89985b06/workflow_summary_mqc.yaml
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d8/94523b2894b386930f32bb98c44206/rna_s1200_S21.pos.DupRate.xls
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/cfe063b95579fd0e4e84dd96eee86f/rna_s1200_S21_combined_fusions_arriba_visualisation.pdf
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/ac72a45406c7ac872ae7aa298f3687/rna_s1221_S42.inner_distance_freq.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/24/4d69cff2353549227ea7817920d27f/rna_s1221_S42_trimmed_1_fastqc.zip
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/c2e3d7f7e9361f4b967df5a5a1ba45/rna_s1200_S21_contamination_mqc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/47/6571f4e77f4d7548fecc934737c01d/rna_s1221_S42_kallisto_mqc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/69/1de7365a7486f2331c6163ac943178/rna_s1221_S42_1_fastqc.zip
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/467cbeb12fd17d5437fa711d42956c/rna_s1200_S21_trimmed_2_fastqc.zip
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/20a5efcdcac9d0f2f11b035d7487df/rna_s1221_S42.read_distribution.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/46/f13747be48ff44beb2cb7379e71685/rna_s1221_S42_preseq_mqc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/825e6edc2b8d8b2b70055dde5a7a95/rna_s1200_S21.Log.final.out
  Downloading: s3://natera-rnd-pltf-dev-s3-gitlab-results/rnafusion/build2775989/regression-run/62901367/pipeline_info/nf_core_pipeline_software_mqc_versions.yml
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/3d2883971b276ccb41f36658efe40e/rna_s1221_S42.infer_experiment.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/tmp/80/c6a690cf0a412e59735342f59465b1/methods_description_mqc.yaml
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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f5/f797e4a6a042d8a1bffb7afb8c1ba9/rna_s1200_S21.fastp.html
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==> STAGING COMPLETE (56 inputs)


  /// MultiQC 🔍 | v1.21

|           multiqc | MultiQC Version v1.35 now available!
|           multiqc | Module(s) in config.run_modules are unknown: arriba
|           multiqc | Only using modules: custom_content, fastqc, fastp, star, samtools, picard, kallisto, rseqc, preseq
|           multiqc | Search path : /tmp/nxf.dWjpS5lQ2D
|         searching | ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 100% 91/91  
|    custom_content | nf-core-rnafusion-summary: Found 1 sample (html)
|    custom_content | kallisto_qc_metrics: Found 2 General Statistics columns
|    custom_content | rna_contamination: Found 2 General Statistics columns
|    custom_content | preseq_metrics: Found 2 General Statistics columns
|    custom_content | nf-core-rnafusion-methods-description: Found 1 sample (html)
|    custom_content | rseqc_extra_metrics: Found 2 General Statistics columns
|    custom_content | seqtools_metrics: Found 2 General Statistics columns
|          kallisto | Found 2 reports
|            picard | Found 2 MarkDuplicates reports
|            preseq | Found 2 reports
|             rseqc | Found 2 read_distribution reports
|             rseqc | Found 2 inner_distance reports
|             rseqc | Found 2 read_duplication reports
|             rseqc | Found 2 junction_annotation reports
|             rseqc | Found 2 junction_saturation reports
|             rseqc | Found 2 infer_experiment reports
|             rseqc | Found 2 bam_stat reports
|              star | Found 2 reports and 2 gene count files
|             fastp | Found 2 reports
|            fastqc | Found 8 reports
|            fastqc | Found 4 reports
|           multiqc | Report      : multiqc_report.html
|           multiqc | Data        : multiqc_data
|           multiqc | Plots       : multiqc_plots
|           multiqc | MultiQC complete