File Info

Filename
output/Logs/Info.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/670feedb43921f30378775d45960a8/output/Logs/Info.log
Size
2.8 KB
Attempt
2026-06-03T03:50:19Z thread 323 Sample sheet being processed by common lib? Yes
2026-06-03T03:50:19Z thread 323 SampleSheet Settings: 
2026-06-03T03:50:19Z thread 323   OverrideCycles = Y150;I8;I8;Y150
2026-06-03T03:50:19Z thread 323 
2026-06-03T03:50:19Z thread 323 shared-thread-linux-native-asio output is disabled
2026-06-03T03:50:19Z thread 323 bcl-convert Version 4.4.6
2026-06-03T03:50:19Z thread 323 Copyright (c) 2014-2025 Illumina, Inc.
2026-06-03T03:50:19Z thread 323 Command Line: --tiles s_1 --output-directory output --bcl-input-directory rundir --sample-sheet SampleSheet.csv 
2026-06-03T03:50:19Z thread 323 Conversion Begins.
2026-06-03T03:50:19Z thread 323 Input BCL Information:
2026-06-03T03:50:19Z thread 323     Read Structure: 2026-06-03T03:50:19Z thread 323 Y1502026-06-03T03:50:19Z thread 323 ;2026-06-03T03:50:19Z thread 323 I82026-06-03T03:50:19Z thread 323 ;2026-06-03T03:50:19Z thread 323 I82026-06-03T03:50:19Z thread 323 ;2026-06-03T03:50:19Z thread 323 Y1502026-06-03T03:50:19Z thread 323 
2026-06-03T03:50:19Z thread 323     RunInfo.xml file lists: 4 lanes, 4 tiles
2026-06-03T03:50:19Z thread 323     BCL file format: bcl.gz
2026-06-03T03:50:19Z thread 323     Positions file format: locs
2026-06-03T03:50:19Z thread 323     Filter file format: filter
2026-06-03T03:50:19Z thread 323 Conversion Information:
2026-06-03T03:50:19Z thread 323     Tile filtering: converting 1/4 tiles
2026-06-03T03:50:19Z thread 323     Lane 2 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-03T03:50:19Z thread 323     Lane 3 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-03T03:50:19Z thread 323     Lane 4 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-03T03:50:19Z thread 323     Sample Count: 2
2026-06-03T03:50:19Z thread 323     Expected number of sample FASTQ files to be created: 4
2026-06-03T03:50:19Z thread 323 # CPU hw threads available: 64
2026-06-03T03:50:19Z thread 323 Parallel Tiles: 4. Threads Per Tile: 16
2026-06-03T03:50:19Z thread 323 SW compressors: 64
2026-06-03T03:50:19Z thread 323 SW decompressors: 32
2026-06-03T03:50:19Z thread 323 SW FASTQ compression level: 1
2026-06-03T03:50:24Z thread 323 Lane 1 Post-run Information:
2026-06-03T03:50:24Z thread 323     Total clusters: 5000000
2026-06-03T03:50:24Z thread 323     Total Genomic Reads: 10000000
2026-06-03T03:50:24Z thread 323     Total Genomic Input Gigabases 1.50
2026-06-03T03:50:24Z thread 323     Minimum reads for a sample: 4999006
2026-06-03T03:50:24Z thread 323     Maximum reads for a sample: 5000994
2026-06-03T03:50:24Z thread 323     Average reads per sample: 5000000.00
2026-06-03T03:50:24Z thread 323     Undetermined reads: 0
2026-06-03T03:50:25Z thread 323 Conversion Complete.