File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/1c799add3e3db467c278f3668954b0/.command.log
Size
975 bytes
Task
NFCORE_RNAFUSION:RNAFUSION:KALLISTO_TO_MULTIQC (rna_s1200_S21)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/31/b4c44ee4c029ac57a5fd07ecee86b0/rna_s1200_S21
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/1c799add3e3db467c278f3668954b0/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/644cd35cfc67b5e4390566e8e14241/rna_s1200_S21.sample_qc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/1c799add3e3db467c278f3668954b0/.command.run
==> STAGING COMPLETE (4 inputs)

Processing Kallisto file: rna_s1200_S21/abundance.h5
Successfully converted rna_s1200_S21/abundance.h5 to rna_s1200_S21_kallisto_mqc.tsv
  Sample: rna_s1200_S21
  Mean Fragment Length: 181.2 bp
  Median Fragment Length: 166.0 bp
  pct_mito_est_counts: 0.002%
  pct_ribo_est_counts: 4.584%
  pct_hk_est_counts: 2.972%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.003%
  pct_ribo_tpm: 10.895%
  pct_hk_tpm: 3.446%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 6.696%