Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d8/94523b2894b386930f32bb98c44206/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d8/94523b2894b386930f32bb98c44206/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/825e6edc2b8d8b2b70055dde5a7a95/rna_s1200_S21.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/f1149b8715780589b3b3ec8eaab375/rna_s1200_S21.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: rna_s1200_S21.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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