.command.sh - Workdir - NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:FLOWCELL_QC (REGRESSION)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/8a0f29b74efbcc86dad27295664d67/.command.sh
Size: 503 bytes
Task: NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:FLOWCELL_QC (REGRESSION)
Attempt

Content

#!/bin/bash -euo pipefail
flowcell_qc.py \
     --runinfo RunInfo.xml --tile-metrics TileMetricsOut.bin \
    --demux-stats ds*/* \
    --quality-metrics qm*/* \
    --index-hopping ih*/* \
    --output flowcell_qc.csv

cat <<-END_VERSIONS > versions.yml
"NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:FLOWCELL_QC":
    python: $(python --version | sed 's/Python //g')
    interop: $(python -c 'import interop; print(interop.__version__)' 2>/dev/null || echo 'N/A')
    flowcell_qc: 1.2.0
END_VERSIONS