.command.sh - Workdir - NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_READDUPLICATION (rna_s1221_S42)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7e/5334dd68fd722a4c6bb4c43636dbf1/.command.sh
Size: 377 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_READDUPLICATION (rna_s1221_S42)
Attempt

Content

#!/bin/bash -euo pipefail
read_duplication.py \
    -i rna_s1221_S42.Aligned.sortedByCoord.out.bam rna_s1221_S42.Aligned.sortedByCoord.out.bam.bai \
    -o rna_s1221_S42 \


cat <<-END_VERSIONS > versions.yml
"NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_READDUPLICATION":
    rseqc: $(read_duplication.py --version | sed -e "s/read_duplication.py //g")
END_VERSIONS