Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/e21a3393f704bd437cee124b9caf35/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/e21a3393f704bd437cee124b9caf35/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/57/9b890cf91cfb3ad2b45c245b88967b/rna_s1200_S21.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/df/b37dc800fbc7a5dbace99de16707af/rna_s1200_S21.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: rna_s1200_S21.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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