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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/c09ea5e5f60184dfc557790011d1e7/rna_s1221_S42.fastp.html
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cf/2bf186d6a3d2094148a2c97f707e2d/rna_s1200_S21.junction_annotation.log
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/81/9842564ab5e6284f20708ae7d540b8/rna_s1221_S42_trimmed_2_fastqc.zip
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/2ad17fbe025be363aaad2a1ac4a983/rna_s1200_S21.inner_distance_freq.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/47945e98e2188a16dfaa388385f82f/rna_s1221_S42_2_fastqc.zip
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/a8b0fc0037f709e46e15e93e19b1b6/rna_s1221_S42_collectinsertsize.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/a9dcee53e574961dfa0d2e07640091/rna_s1200_S21.lc_extrap.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/e693096b5fc513049f8162ace8e09a/rna_s1200_S21.junctionSaturation_plot.r
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/965e44f324593c920f191b25f67191/rna_s1221_S42_combined_fusions_arriba_visualisation.pdf
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a0/ecc3edb662e426a6320b1011c4a29b/rna_s1221_S42.infer_experiment.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a2/5cffdfdde0afbf2b9c336c150c0c9b/rna_s1221_S42.pos.DupRate.xls
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/505db65cacba6a5ae202225cfd6646/rna_s1221_S42_seqtool_mqc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b0/55f6c3866c08b3703d348b1fa1c4ac/rna_s1221_S42_rseqc_extra_mqc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/a9dcee53e574961dfa0d2e07640091/rna_s1200_S21.attempt1.command.log
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/73/4db8ffcd3165debb5f9a764e305bfc/rna_s1200_S21.md.bam.metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/95723e02a0de39273502285da91999/rna_s1200_S21.infer_experiment.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/tmp/8d/28923d39bad11e2f80fa6a2462a88d/workflow_summary_mqc.yaml
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/31/f40d2a7b90363fc755845b94e6b1c9/rna_s1221_S42.attempt1.command.log
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c0/4908a8c960393d6cc3003d8a6d5c7d/rna_s1200_S21_1_fastqc.zip
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ec/7ea4622eb11c7f401b994612336cd7/rna_s1221_S42_contamination_mqc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/e88efbea4562445c11d2eca5b1313d/rna_s1200_S21_seqtool_mqc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/d9473ba92378e08546dc8ba87b7cfe/rna_s1221_S42.bam_stat.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/e21a3393f704bd437cee124b9caf35/rna_s1200_S21.pos.DupRate.xls
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/57/9b890cf91cfb3ad2b45c245b88967b/rna_s1200_S21.Log.final.out
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/1ea93249256fe4a39cde8b04f853b6/rna_s1200_S21_trimmed_1_fastqc.zip
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/37/9c1a12c6c75205180fd80d5e6a265b/rna_s1200_S21_rna_metrics.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/tmp/68/ad7341a39d5ad43dc0cca82aefa42a/methods_description_mqc.yaml
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/e9b6aba0fcb99c588d2f8c8c5fa08f/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4b/79007fdcb5beda13eb32f4b7ab6288/rna_s1221_S42_preseq_mqc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/57d30df15f462531526ca79751a889/rna_s1221_S42.inner_distance_freq.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/47945e98e2188a16dfaa388385f82f/rna_s1221_S42_1_fastqc.zip
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/81/3d3ddb375a39fc4754be40a98f17cb/rna_s1221_S42_rna_metrics.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/6b3bfada533b37a219de86fb4854d0/rna_s1221_S42_kallisto_mqc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/31/f40d2a7b90363fc755845b94e6b1c9/rna_s1221_S42.lc_extrap.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/b225bc5b1ba78c82b255ecb9cbed55/rna_s1221_S42.ReadsPerGene.out.tab
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/4387bc227c1404a9487ab1e2100ef0/rna_s1200_S21.log
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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/e9b6aba0fcb99c588d2f8c8c5fa08f/.command.sh
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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9c/d04b94a28790f752b68b09b6b7ea9f/rna_s1200_S21.fastp.json
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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c1/4073c413a42a440b737eabe597721c/rna_s1200_S21.read_distribution.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c0/4908a8c960393d6cc3003d8a6d5c7d/rna_s1200_S21_2_fastqc.zip
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/1ea93249256fe4a39cde8b04f853b6/rna_s1200_S21_trimmed_2_fastqc.zip
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/b225bc5b1ba78c82b255ecb9cbed55/rna_s1221_S42.Log.final.out
  Downloading: s3://natera-rnd-pltf-dev-s3-gitlab-results/rnafusion/build2776425/baseline-run/62916108/pipeline_info/nf_core_pipeline_software_mqc_versions.yml
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9c/d04b94a28790f752b68b09b6b7ea9f/rna_s1200_S21.fastp.html
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/57/9b890cf91cfb3ad2b45c245b88967b/rna_s1200_S21.ReadsPerGene.out.tab
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fd/c0df1d3d8b77e0e37d2675487ecab0/rna_s1200_S21_kallisto_mqc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-b08e5fb2-6d8b-4618-9fdd-da85b61f0360/d4/e5bc4be8b166e7b115663559569cbe/multiqc_config.yml
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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cf/39f41e09e7fe8298c17fbbec28916e/rna_s1200_S21_preseq_mqc.tsv
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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/89083a6b6c26ad0436dea9e1e5dd89/rna_s1221_S42.log
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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5f/aa98b3cfa3b0ba20bdebd73706c1ee/rna_s1200_S21.bam_stat.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a5/9ffa0e45c616ff3c75c07e5dc46dec/rna_s1200_S21_contamination_mqc.tsv
==> STAGING COMPLETE (60 inputs)


  /// MultiQC 🔍 | v1.21

|           multiqc | MultiQC Version v1.35 now available!
|           multiqc | Module(s) in config.run_modules are unknown: arriba
|           multiqc | Only using modules: custom_content, fastqc, fastp, star, samtools, picard, kallisto, rseqc, preseq
|           multiqc | Search path : /tmp/nxf.tOOASF8pEz
|         searching | ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 100% 95/95  
|    custom_content | rseqc_extra_metrics: Found 2 General Statistics columns
|    custom_content | seqtools_metrics: Found 2 General Statistics columns
|    custom_content | nf-core-rnafusion-summary: Found 1 sample (html)
|    custom_content | rna_contamination: Found 2 General Statistics columns
|    custom_content | nf-core-rnafusion-methods-description: Found 1 sample (html)
|    custom_content | preseq_metrics: Found 2 General Statistics columns
|    custom_content | kallisto_qc_metrics: Found 2 General Statistics columns
|          kallisto | Found 2 reports
|            picard | Found 2 InsertSizeMetrics reports
|            picard | Found 2 MarkDuplicates reports
|            picard | Found 2 RnaSeqMetrics reports
|            preseq | Found 2 reports
|             rseqc | Found 2 read_distribution reports
|             rseqc | Found 2 inner_distance reports
|             rseqc | Found 2 read_duplication reports
|             rseqc | Found 2 junction_annotation reports
|             rseqc | Found 2 junction_saturation reports
|             rseqc | Found 2 infer_experiment reports
|             rseqc | Found 2 bam_stat reports
|              star | Found 2 reports and 2 gene count files
|             fastp | Found 2 reports
|            fastqc | Found 8 reports
|            fastqc | Found 4 reports
|           multiqc | Report      : multiqc_report.html
|           multiqc | Data        : multiqc_data
|           multiqc | Plots       : multiqc_plots
|           multiqc | MultiQC complete