Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/7b351bc9499447045b38725902b2cd/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/61/bedd4992350572084aaa469135287b/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/61/bedd4992350572084aaa469135287b/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/320c77402664fc25775a7c2675bb8d/rna_s1200_S21.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/613d27af2da60f89ec407c24b98028/rna_s1200_S21.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 11742011
[W::hts_idx_load3] The index file is older than the data file: rna_s1200_S21.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	11742011
Known Splicing Events:	11650978
Partial Novel Splicing Events:	63942
Novel Splicing Events:	24871
Filtered Splicing Events:	2220

Total splicing  Junctions:	179703
Known Splicing Junctions:	150896
Partial Novel Splicing Junctions:	23555
Novel Splicing Junctions:	5252

===================================================================
Create BED file ...
Create Interact file ...