Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/f87e9d06b362fee22bd04072d1a86d/rna_s1221_S42.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/33653ad5527f280b27601377729431/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/33653ad5527f280b27601377729431/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/00/06a772fa6915b0e577c8e642311ab0/rna_s1221_S42.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: rna_s1221_S42.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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