Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/7b351bc9499447045b38725902b2cd/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/af2e0172147bc70ea5849dc1523573/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/af2e0172147bc70ea5849dc1523573/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/320c77402664fc25775a7c2675bb8d/rna_s1200_S21.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/613d27af2da60f89ec407c24b98028/rna_s1200_S21.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

processing ref_annot.bed ... Done
[W::hts_idx_load3] The index file is older than the data file: rna_s1200_S21.Aligned.sortedByCoord.out.bam.bai
processing rna_s1200_S21.Aligned.sortedByCoord.out.bam ... Finished