File Info

Filename
output/Logs/Info.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3e/cdc7784af286a21f3c8d9cd7fcc776/output/Logs/Info.log
Size
2.8 KB
Attempt
2026-06-02T14:34:22Z thread 421 Sample sheet being processed by common lib? Yes
2026-06-02T14:34:22Z thread 421 SampleSheet Settings: 
2026-06-02T14:34:22Z thread 421   OverrideCycles = Y150;I8;I8;Y150
2026-06-02T14:34:22Z thread 421 
2026-06-02T14:34:22Z thread 421 shared-thread-linux-native-asio output is disabled
2026-06-02T14:34:22Z thread 421 bcl-convert Version 4.4.6
2026-06-02T14:34:22Z thread 421 Copyright (c) 2014-2025 Illumina, Inc.
2026-06-02T14:34:22Z thread 421 Command Line: --tiles s_2 --output-directory output --bcl-input-directory rundir --sample-sheet rundir/SampleSheet.csv 
2026-06-02T14:34:22Z thread 421 Conversion Begins.
2026-06-02T14:34:22Z thread 421 Input BCL Information:
2026-06-02T14:34:22Z thread 421     Read Structure: 2026-06-02T14:34:22Z thread 421 Y1502026-06-02T14:34:22Z thread 421 ;2026-06-02T14:34:22Z thread 421 I82026-06-02T14:34:22Z thread 421 ;2026-06-02T14:34:22Z thread 421 I82026-06-02T14:34:22Z thread 421 ;2026-06-02T14:34:22Z thread 421 Y1502026-06-02T14:34:22Z thread 421 
2026-06-02T14:34:22Z thread 421     RunInfo.xml file lists: 4 lanes, 4 tiles
2026-06-02T14:34:22Z thread 421     BCL file format: bcl.gz
2026-06-02T14:34:22Z thread 421     Positions file format: locs
2026-06-02T14:34:22Z thread 421     Filter file format: filter
2026-06-02T14:34:22Z thread 421 Conversion Information:
2026-06-02T14:34:22Z thread 421     Tile filtering: converting 1/4 tiles
2026-06-02T14:34:22Z thread 421     Lane 1 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-02T14:34:22Z thread 421     Lane 3 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-02T14:34:22Z thread 421     Lane 4 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-02T14:34:22Z thread 421     Sample Count: 2
2026-06-02T14:34:22Z thread 421     Expected number of sample FASTQ files to be created: 4
2026-06-02T14:34:22Z thread 421 # CPU hw threads available: 64
2026-06-02T14:34:22Z thread 421 Parallel Tiles: 4. Threads Per Tile: 16
2026-06-02T14:34:22Z thread 421 SW compressors: 64
2026-06-02T14:34:22Z thread 421 SW decompressors: 32
2026-06-02T14:34:22Z thread 421 SW FASTQ compression level: 1
2026-06-02T14:34:25Z thread 421 Lane 2 Post-run Information:
2026-06-02T14:34:25Z thread 421     Total clusters: 5000000
2026-06-02T14:34:25Z thread 421     Total Genomic Reads: 10000000
2026-06-02T14:34:25Z thread 421     Total Genomic Input Gigabases 1.50
2026-06-02T14:34:25Z thread 421     Minimum reads for a sample: 4999236
2026-06-02T14:34:25Z thread 421     Maximum reads for a sample: 5000764
2026-06-02T14:34:25Z thread 421     Average reads per sample: 5000000.00
2026-06-02T14:34:25Z thread 421     Undetermined reads: 0
2026-06-02T14:34:26Z thread 421 Conversion Complete.