File Info

Filename
output/Logs/Info.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3a/ed4aec775dafaa631bdb131c551334/output/Logs/Info.log
Size
2.8 KB
Attempt
2026-06-03T03:50:32Z thread 331 Sample sheet being processed by common lib? Yes
2026-06-03T03:50:32Z thread 331 SampleSheet Settings: 
2026-06-03T03:50:32Z thread 331   OverrideCycles = Y150;I8;I8;Y150
2026-06-03T03:50:32Z thread 331 
2026-06-03T03:50:32Z thread 331 shared-thread-linux-native-asio output is disabled
2026-06-03T03:50:32Z thread 331 bcl-convert Version 4.4.6
2026-06-03T03:50:32Z thread 331 Copyright (c) 2014-2025 Illumina, Inc.
2026-06-03T03:50:32Z thread 331 Command Line: --tiles s_2 --output-directory output --bcl-input-directory rundir --sample-sheet SampleSheet.csv 
2026-06-03T03:50:32Z thread 331 Conversion Begins.
2026-06-03T03:50:32Z thread 331 Input BCL Information:
2026-06-03T03:50:32Z thread 331     Read Structure: 2026-06-03T03:50:32Z thread 331 Y1502026-06-03T03:50:32Z thread 331 ;2026-06-03T03:50:32Z thread 331 I82026-06-03T03:50:32Z thread 331 ;2026-06-03T03:50:32Z thread 331 I82026-06-03T03:50:32Z thread 331 ;2026-06-03T03:50:32Z thread 331 Y1502026-06-03T03:50:32Z thread 331 
2026-06-03T03:50:32Z thread 331     RunInfo.xml file lists: 4 lanes, 4 tiles
2026-06-03T03:50:32Z thread 331     BCL file format: bcl.gz
2026-06-03T03:50:32Z thread 331     Positions file format: locs
2026-06-03T03:50:32Z thread 331     Filter file format: filter
2026-06-03T03:50:32Z thread 331 Conversion Information:
2026-06-03T03:50:32Z thread 331     Tile filtering: converting 1/4 tiles
2026-06-03T03:50:32Z thread 331     Lane 1 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-03T03:50:32Z thread 331     Lane 3 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-03T03:50:32Z thread 331     Lane 4 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-03T03:50:32Z thread 331     Sample Count: 2
2026-06-03T03:50:32Z thread 331     Expected number of sample FASTQ files to be created: 4
2026-06-03T03:50:32Z thread 331 # CPU hw threads available: 64
2026-06-03T03:50:32Z thread 331 Parallel Tiles: 4. Threads Per Tile: 16
2026-06-03T03:50:32Z thread 331 SW compressors: 64
2026-06-03T03:50:32Z thread 331 SW decompressors: 32
2026-06-03T03:50:32Z thread 331 SW FASTQ compression level: 1
2026-06-03T03:50:35Z thread 331 Lane 2 Post-run Information:
2026-06-03T03:50:35Z thread 331     Total clusters: 5000000
2026-06-03T03:50:35Z thread 331     Total Genomic Reads: 10000000
2026-06-03T03:50:35Z thread 331     Total Genomic Input Gigabases 1.50
2026-06-03T03:50:35Z thread 331     Minimum reads for a sample: 4999236
2026-06-03T03:50:35Z thread 331     Maximum reads for a sample: 5000764
2026-06-03T03:50:35Z thread 331     Average reads per sample: 5000000.00
2026-06-03T03:50:35Z thread 331     Undetermined reads: 0
2026-06-03T03:50:36Z thread 331 Conversion Complete.