Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/85944e25bb10cc990bfa085f08a9c6/rna_s1221_S42.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d5/534b5589ea80db9cc7580947ab5072/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/31f0a56b836ea4773229b20cd54c86/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/31f0a56b836ea4773229b20cd54c86/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/68/ab467a2c44e33fe38decaa49a0894f/rna_s1221_S42.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 11219780
[W::hts_idx_load3] The index file is older than the data file: rna_s1221_S42.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	11219780
Known Splicing Events:	11135135
Partial Novel Splicing Events:	59248
Novel Splicing Events:	23159
Filtered Splicing Events:	2238

Total splicing  Junctions:	175854
Known Splicing Junctions:	148597
Partial Novel Splicing Junctions:	21832
Novel Splicing Junctions:	5425

===================================================================
Create BED file ...
Create Interact file ...