/usr/local/bin/picard: line 5: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8): No such file or directory
INFO 2026-06-02 21:52:26 RExecutor Executing R script via command: Rscript /tmp/script2169406630302602580.R
ERROR 2026-06-02 21:52:26 ProcessExecutor /bin/sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
ERROR 2026-06-02 21:52:26 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
ERROR 2026-06-02 21:52:26 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
ERROR 2026-06-02 21:52:26 ProcessExecutor During startup - Warning messages:
ERROR 2026-06-02 21:52:26 ProcessExecutor 1: Setting LC_CTYPE failed, using "C"
ERROR 2026-06-02 21:52:26 ProcessExecutor 2: Setting LC_COLLATE failed, using "C"
ERROR 2026-06-02 21:52:26 ProcessExecutor 3: Setting LC_TIME failed, using "C"
ERROR 2026-06-02 21:52:26 ProcessExecutor 4: Setting LC_MESSAGES failed, using "C"
ERROR 2026-06-02 21:52:26 ProcessExecutor 5: Setting LC_MONETARY failed, using "C"
ERROR 2026-06-02 21:52:26 ProcessExecutor 6: Setting LC_PAPER failed, using "C"
ERROR 2026-06-02 21:52:26 ProcessExecutor 7: Setting LC_MEASUREMENT failed, using "C"
INFO 2026-06-02 21:52:26 ProcessExecutor [1] "Checking if R is installed"
ERROR 2026-06-02 21:52:26 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
Jun 02, 2026 9:52:26 PM com.intel.gkl.NativeLibraryLoader load
INFO: Loading libgkl_compression.so from jar:file:/usr/local/share/picard-3.1.0-0/picard.jar!/com/intel/gkl/native/libgkl_compression.so
[Tue Jun 02 21:52:26 GMT 2026] CollectInsertSizeMetrics --Histogram_FILE 659_bGW-T1-TRNA-1_B23MHV2LT4_1_collectinsertsize.pdf --INPUT 659_bGW-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_bGW-T1-TRNA-1_B23MHV2LT4_1_collectinsertsize.txt --DEVIATIONS 10.0 --MINIMUM_PCT 0.05 --METRIC_ACCUMULATION_LEVEL ALL_READS --INCLUDE_DUPLICATES false --ASSUME_SORTED true --STOP_AFTER 0 --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Tue Jun 02 21:52:26 GMT 2026] Executing as ?@nf-2cdd5b01b5239c297226b8c1a575e81c-03092-6zqtq on Linux 6.12.83 amd64; OpenJDK 64-Bit Server VM 20-internal-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:3.1.0
INFO 2026-06-02 21:52:27 SinglePassSamProgram Processed 1,000,000 records. Elapsed time: 00:00:01s. Time for last 1,000,000: 1s. Last read position: chr1:1,354,037
INFO 2026-06-02 21:52:28 SinglePassSamProgram Processed 2,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 1s. Last read position: chr1:2,588,408
INFO 2026-06-02 21:52:29 SinglePassSamProgram Processed 3,000,000 records. Elapsed time: 00:00:03s. Time for last 1,000,000: 1s. Last read position: chr1:8,360,550
INFO 2026-06-02 21:52:30 SinglePassSamProgram Processed 4,000,000 records. Elapsed time: 00:00:04s. Time for last 1,000,000: 1s. Last read position: chr1:11,020,492
INFO 2026-06-02 21:52:31 SinglePassSamProgram Processed 5,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 1s. Last read position: chr1:15,428,698
INFO 2026-06-02 21:52:32 SinglePassSamProgram Processed 6,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 0s. Last read position: chr1:16,995,971
INFO 2026-06-02 21:52:33 SinglePassSamProgram Processed 7,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 0s. Last read position: chr1:19,655,045
INFO 2026-06-02 21:52:34 SinglePassSamProgram Processed 8,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 0s. Last read position: chr1:21,828,400
INFO 2026-06-02 21:52:35 SinglePassSamProgram Processed 9,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 0s. Last read position: chr1:21,885,046
INFO 2026-06-02 21:52:35 SinglePassSamProgram Processed 10,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 0s. Last read position: chr1:23,693,810
INFO 2026-06-02 21:52:36 SinglePassSamProgram Processed 11,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 0s. Last read position: chr1:26,280,863
INFO 2026-06-02 21:52:37 SinglePassSamProgram Processed 12,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 0s. Last read position: chr1:27,551,218
INFO 2026-06-02 21:52:38 SinglePassSamProgram Processed 13,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 0s. Last read position: chr1:31,429,010
INFO 2026-06-02 21:52:38 SinglePassSamProgram Processed 14,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 0s. Last read position: chr1:32,669,068
INFO 2026-06-02 21:52:39 SinglePassSamProgram Processed 15,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 0s. Last read position: chr1:35,603,253
INFO 2026-06-02 21:52:40 SinglePassSamProgram Processed 16,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 0s. Last read position: chr1:39,332,095
INFO 2026-06-02 21:52:41 SinglePassSamProgram Processed 17,000,000 records. Elapsed time: 00:00:14s. Time for last 1,000,000: 0s. Last read position: chr1:40,409,792
INFO 2026-06-02 21:52:41 SinglePassSamProgram Processed 18,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 0s. Last read position: chr1:43,545,091
INFO 2026-06-02 21:52:42 SinglePassSamProgram Processed 19,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 0s. Last read position: chr1:45,551,029
INFO 2026-06-02 21:52:43 SinglePassSamProgram Processed 20,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 0s. Last read position: chr1:51,765,849
INFO 2026-06-02 21:52:44 SinglePassSamProgram Processed 21,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 0s. Last read position: chr1:56,578,939
INFO 2026-06-02 21:52:44 SinglePassSamProgram Processed 22,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 0s. Last read position: chr1:67,420,101
INFO 2026-06-02 21:52:45 SinglePassSamProgram Processed 23,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 0s. Last read position: chr1:85,582,522
INFO 2026-06-02 21:52:46 SinglePassSamProgram Processed 24,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 0s. Last read position: chr1:94,499,512
INFO 2026-06-02 21:52:47 SinglePassSamProgram Processed 25,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 0s. Last read position: chr1:108,992,392
INFO 2026-06-02 21:52:47 SinglePassSamProgram Processed 26,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 0s. Last read position: chr1:112,523,636
INFO 2026-06-02 21:52:48 SinglePassSamProgram Processed 27,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 0s. Last read position: chr1:114,732,722
INFO 2026-06-02 21:52:49 SinglePassSamProgram Processed 28,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 0s. Last read position: chr1:119,915,790
INFO 2026-06-02 21:52:50 SinglePassSamProgram Processed 29,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 0s. Last read position: chr1:143,904,262
INFO 2026-06-02 21:52:50 SinglePassSamProgram Processed 30,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 0s. Last read position: chr1:147,287,653
INFO 2026-06-02 21:52:51 SinglePassSamProgram Processed 31,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 0s. Last read position: chr1:149,842,258
INFO 2026-06-02 21:52:52 SinglePassSamProgram Processed 32,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 0s. Last read position: chr1:150,578,394
INFO 2026-06-02 21:52:53 SinglePassSamProgram Processed 33,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 0s. Last read position: chr1:151,404,782
INFO 2026-06-02 21:52:54 SinglePassSamProgram Processed 34,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 0s. Last read position: chr1:153,940,479
INFO 2026-06-02 21:52:55 SinglePassSamProgram Processed 35,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 0s. Last read position: chr1:154,182,987
INFO 2026-06-02 21:52:55 SinglePassSamProgram Processed 36,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 0s. Last read position: chr1:155,053,452
INFO 2026-06-02 21:52:57 SinglePassSamProgram Processed 37,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 1s. Last read position: chr1:155,257,517
INFO 2026-06-02 21:52:57 SinglePassSamProgram Processed 38,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 0s. Last read position: chr1:156,114,977
INFO 2026-06-02 21:52:58 SinglePassSamProgram Processed 39,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 0s. Last read position: chr1:156,467,550
INFO 2026-06-02 21:52:59 SinglePassSamProgram Processed 40,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 0s. Last read position: chr1:160,211,601
INFO 2026-06-02 21:53:00 SinglePassSamProgram Processed 41,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 0s. Last read position: chr1:161,542,892
INFO 2026-06-02 21:53:00 SinglePassSamProgram Processed 42,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 0s. Last read position: chr1:168,183,909
INFO 2026-06-02 21:53:01 SinglePassSamProgram Processed 43,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 0s. Last read position: chr1:171,527,795
INFO 2026-06-02 21:53:02 SinglePassSamProgram Processed 44,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 0s. Last read position: chr1:179,108,939
INFO 2026-06-02 21:53:03 SinglePassSamProgram Processed 45,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 0s. Last read position: chr1:183,186,350
INFO 2026-06-02 21:53:03 SinglePassSamProgram Processed 46,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 0s. Last read position: chr1:186,336,505
INFO 2026-06-02 21:53:04 SinglePassSamProgram Processed 47,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 0s. Last read position: chr1:200,991,133
INFO 2026-06-02 21:53:05 SinglePassSamProgram Processed 48,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 0s. Last read position: chr1:202,013,854
INFO 2026-06-02 21:53:06 SinglePassSamProgram Processed 49,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 0s. Last read position: chr1:203,818,647
INFO 2026-06-02 21:53:06 SinglePassSamProgram Processed 50,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 0s. Last read position: chr1:206,648,689
INFO 2026-06-02 21:53:07 SinglePassSamProgram Processed 51,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 0s. Last read position: chr1:209,618,557
INFO 2026-06-02 21:53:08 SinglePassSamProgram Processed 52,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 1s. Last read position: chr1:220,151,386
INFO 2026-06-02 21:53:09 SinglePassSamProgram Processed 53,000,000 records. Elapsed time: 00:00:43s. Time for last 1,000,000: 0s. Last read position: chr1:225,783,356
INFO 2026-06-02 21:53:10 SinglePassSamProgram Processed 54,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 0s. Last read position: chr1:228,148,779
INFO 2026-06-02 21:53:11 SinglePassSamProgram Processed 55,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 0s. Last read position: chr1:234,357,054
INFO 2026-06-02 21:53:12 SinglePassSamProgram Processed 56,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 0s. Last read position: chr1:243,165,981
INFO 2026-06-02 21:53:12 SinglePassSamProgram Processed 57,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 0s. Last read position: chr2:275,144
INFO 2026-06-02 21:53:13 SinglePassSamProgram Processed 58,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 0s. Last read position: chr2:10,791,800
INFO 2026-06-02 21:53:14 SinglePassSamProgram Processed 59,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 0s. Last read position: chr2:24,076,204
INFO 2026-06-02 21:53:15 SinglePassSamProgram Processed 60,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 0s. Last read position: chr2:27,083,631
INFO 2026-06-02 21:53:16 SinglePassSamProgram Processed 61,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 0s. Last read position: chr2:28,783,943
INFO 2026-06-02 21:53:17 SinglePassSamProgram Processed 62,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 0s. Last read position: chr2:32,916,260
INFO 2026-06-02 21:53:18 SinglePassSamProgram Processed 63,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-02 21:53:19 SinglePassSamProgram Processed 64,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 0s. Last read position: chr2:32,916,404
INFO 2026-06-02 21:53:19 SinglePassSamProgram Processed 65,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 0s. Last read position: chr2:32,916,406
INFO 2026-06-02 21:53:20 SinglePassSamProgram Processed 66,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 0s. Last read position: chr2:33,595,571
INFO 2026-06-02 21:53:21 SinglePassSamProgram Processed 67,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 0s. Last read position: chr2:42,295,154
INFO 2026-06-02 21:53:22 SinglePassSamProgram Processed 68,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 0s. Last read position: chr2:46,382,465
INFO 2026-06-02 21:53:22 SinglePassSamProgram Processed 69,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 0s. Last read position: chr2:54,625,931
INFO 2026-06-02 21:53:23 SinglePassSamProgram Processed 70,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 0s. Last read position: chr2:55,549,928
INFO 2026-06-02 21:53:24 SinglePassSamProgram Processed 71,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 0s. Last read position: chr2:64,591,937
INFO 2026-06-02 21:53:25 SinglePassSamProgram Processed 72,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 0s. Last read position: chr2:69,370,090
INFO 2026-06-02 21:53:26 SinglePassSamProgram Processed 73,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 0s. Last read position: chr2:73,766,498
INFO 2026-06-02 21:53:26 SinglePassSamProgram Processed 74,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 0s. Last read position: chr2:74,882,229
INFO 2026-06-02 21:53:27 SinglePassSamProgram Processed 75,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 0s. Last read position: chr2:86,505,756
INFO 2026-06-02 21:53:28 SinglePassSamProgram Processed 76,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 0s. Last read position: chr2:96,799,590
INFO 2026-06-02 21:53:29 SinglePassSamProgram Processed 77,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 0s. Last read position: chr2:101,871,587
INFO 2026-06-02 21:53:30 SinglePassSamProgram Processed 78,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 0s. Last read position: chr2:108,764,922
INFO 2026-06-02 21:53:30 SinglePassSamProgram Processed 79,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 0s. Last read position: chr2:110,534,371
INFO 2026-06-02 21:53:31 SinglePassSamProgram Processed 80,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 0s. Last read position: chr2:113,596,408
INFO 2026-06-02 21:53:32 SinglePassSamProgram Processed 81,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 0s. Last read position: chr2:128,116,275
INFO 2026-06-02 21:53:33 SinglePassSamProgram Processed 82,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 0s. Last read position: chr2:144,401,261
INFO 2026-06-02 21:53:33 SinglePassSamProgram Processed 83,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 0s. Last read position: chr2:151,607,524
INFO 2026-06-02 21:53:34 SinglePassSamProgram Processed 84,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 0s. Last read position: chr2:159,003,804
INFO 2026-06-02 21:53:35 SinglePassSamProgram Processed 85,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 0s. Last read position: chr2:169,806,864
INFO 2026-06-02 21:53:36 SinglePassSamProgram Processed 86,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 0s. Last read position: chr2:174,572,398
INFO 2026-06-02 21:53:37 SinglePassSamProgram Processed 87,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 0s. Last read position: chr2:178,535,460
INFO 2026-06-02 21:53:37 SinglePassSamProgram Processed 88,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 0s. Last read position: chr2:178,563,541
INFO 2026-06-02 21:53:38 SinglePassSamProgram Processed 89,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 0s. Last read position: chr2:178,589,138
INFO 2026-06-02 21:53:39 SinglePassSamProgram Processed 90,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 0s. Last read position: chr2:178,621,648
INFO 2026-06-02 21:53:40 SinglePassSamProgram Processed 91,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 0s. Last read position: chr2:178,659,212
INFO 2026-06-02 21:53:41 SinglePassSamProgram Processed 92,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 0s. Last read position: chr2:178,721,005
INFO 2026-06-02 21:53:41 SinglePassSamProgram Processed 93,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 0s. Last read position: chr2:178,795,052
INFO 2026-06-02 21:53:42 SinglePassSamProgram Processed 94,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 0s. Last read position: chr2:188,984,938
INFO 2026-06-02 21:53:43 SinglePassSamProgram Processed 95,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 0s. Last read position: chr2:189,004,005
INFO 2026-06-02 21:53:44 SinglePassSamProgram Processed 96,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 0s. Last read position: chr2:189,110,281
INFO 2026-06-02 21:53:45 SinglePassSamProgram Processed 97,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 0s. Last read position: chr2:197,494,656
INFO 2026-06-02 21:53:45 SinglePassSamProgram Processed 98,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 0s. Last read position: chr2:202,982,140
INFO 2026-06-02 21:53:46 SinglePassSamProgram Processed 99,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 0s. Last read position: chr2:215,332,485
INFO 2026-06-02 21:53:47 SinglePassSamProgram Processed 100,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 0s. Last read position: chr2:215,367,981
INFO 2026-06-02 21:53:48 SinglePassSamProgram Processed 101,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 1s. Last read position: chr2:215,372,277
INFO 2026-06-02 21:53:49 SinglePassSamProgram Processed 102,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 0s. Last read position: chr2:215,375,653
INFO 2026-06-02 21:53:50 SinglePassSamProgram Processed 103,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 0s. Last read position: chr2:215,379,274
INFO 2026-06-02 21:53:50 SinglePassSamProgram Processed 104,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 0s. Last read position: chr2:215,384,960
INFO 2026-06-02 21:53:51 SinglePassSamProgram Processed 105,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 0s. Last read position: chr2:215,394,611
INFO 2026-06-02 21:53:52 SinglePassSamProgram Processed 106,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 0s. Last read position: chr2:215,404,600
INFO 2026-06-02 21:53:53 SinglePassSamProgram Processed 107,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 0s. Last read position: chr2:215,409,563
INFO 2026-06-02 21:53:53 SinglePassSamProgram Processed 108,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 0s. Last read position: chr2:215,422,091
INFO 2026-06-02 21:53:54 SinglePassSamProgram Processed 109,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 0s. Last read position: chr2:215,430,712
INFO 2026-06-02 21:53:55 SinglePassSamProgram Processed 110,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 0s. Last read position: chr2:216,499,379
INFO 2026-06-02 21:53:56 SinglePassSamProgram Processed 111,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 0s. Last read position: chr2:217,885,060
INFO 2026-06-02 21:53:57 SinglePassSamProgram Processed 112,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 0s. Last read position: chr2:219,182,358
INFO 2026-06-02 21:53:57 SinglePassSamProgram Processed 113,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 0s. Last read position: chr2:219,506,710
INFO 2026-06-02 21:53:58 SinglePassSamProgram Processed 114,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 0s. Last read position: chr2:229,829,225
INFO 2026-06-02 21:53:59 SinglePassSamProgram Processed 115,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 0s. Last read position: chr2:231,711,950
INFO 2026-06-02 21:54:00 SinglePassSamProgram Processed 116,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 0s. Last read position: chr2:237,344,461
INFO 2026-06-02 21:54:01 SinglePassSamProgram Processed 117,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 1s. Last read position: chr2:237,394,596
INFO 2026-06-02 21:54:02 SinglePassSamProgram Processed 118,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 1s. Last read position: chr2:241,248,091
INFO 2026-06-02 21:54:03 SinglePassSamProgram Processed 119,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 1s. Last read position: chr3:9,757,786
INFO 2026-06-02 21:54:04 SinglePassSamProgram Processed 120,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 1s. Last read position: chr3:12,936,216
INFO 2026-06-02 21:54:05 SinglePassSamProgram Processed 121,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 0s. Last read position: chr3:25,620,015
INFO 2026-06-02 21:54:06 SinglePassSamProgram Processed 122,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 1s. Last read position: chr3:37,047,564
INFO 2026-06-02 21:54:07 SinglePassSamProgram Processed 123,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 1s. Last read position: chr3:41,199,534
INFO 2026-06-02 21:54:08 SinglePassSamProgram Processed 124,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 1s. Last read position: chr3:45,706,878
INFO 2026-06-02 21:54:09 SinglePassSamProgram Processed 125,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 1s. Last read position: chr3:47,852,860
INFO 2026-06-02 21:54:10 SinglePassSamProgram Processed 126,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 0s. Last read position: chr3:48,794,037
INFO 2026-06-02 21:54:11 SinglePassSamProgram Processed 127,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 0s. Last read position: chr3:49,362,495
INFO 2026-06-02 21:54:12 SinglePassSamProgram Processed 128,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 0s. Last read position: chr3:50,355,395
INFO 2026-06-02 21:54:13 SinglePassSamProgram Processed 129,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 0s. Last read position: chr3:52,518,271
INFO 2026-06-02 21:54:14 SinglePassSamProgram Processed 130,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 0s. Last read position: chr3:57,896,889
INFO 2026-06-02 21:54:14 SinglePassSamProgram Processed 131,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 0s. Last read position: chr3:63,995,571
INFO 2026-06-02 21:54:15 SinglePassSamProgram Processed 132,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 1s. Last read position: chr3:87,240,708
INFO 2026-06-02 21:54:16 SinglePassSamProgram Processed 133,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 0s. Last read position: chr3:100,744,855
INFO 2026-06-02 21:54:17 SinglePassSamProgram Processed 134,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 0s. Last read position: chr3:112,638,832
INFO 2026-06-02 21:54:18 SinglePassSamProgram Processed 135,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 0s. Last read position: chr3:121,694,655
INFO 2026-06-02 21:54:19 SinglePassSamProgram Processed 136,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 0s. Last read position: chr3:124,674,471
INFO 2026-06-02 21:54:19 SinglePassSamProgram Processed 137,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 0s. Last read position: chr3:128,060,178
INFO 2026-06-02 21:54:20 SinglePassSamProgram Processed 138,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 0s. Last read position: chr3:129,671,070
INFO 2026-06-02 21:54:21 SinglePassSamProgram Processed 139,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 0s. Last read position: chr3:139,357,838
INFO 2026-06-02 21:54:22 SinglePassSamProgram Processed 140,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 0s. Last read position: chr3:149,371,820
INFO 2026-06-02 21:54:22 SinglePassSamProgram Processed 141,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 0s. Last read position: chr3:158,543,372
INFO 2026-06-02 21:54:23 SinglePassSamProgram Processed 142,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 0s. Last read position: chr3:170,392,243
INFO 2026-06-02 21:54:24 SinglePassSamProgram Processed 143,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 0s. Last read position: chr3:183,651,096
INFO 2026-06-02 21:54:25 SinglePassSamProgram Processed 144,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 0s. Last read position: chr3:184,345,351
INFO 2026-06-02 21:54:26 SinglePassSamProgram Processed 145,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 0s. Last read position: chr3:188,484,617
INFO 2026-06-02 21:54:26 SinglePassSamProgram Processed 146,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 0s. Last read position: chr3:194,427,108
INFO 2026-06-02 21:54:27 SinglePassSamProgram Processed 147,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 0s. Last read position: chr3:195,779,044
INFO 2026-06-02 21:54:28 SinglePassSamProgram Processed 148,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 0s. Last read position: chr3:195,782,284
INFO 2026-06-02 21:54:29 SinglePassSamProgram Processed 149,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 0s. Last read position: chr3:195,785,545
INFO 2026-06-02 21:54:29 SinglePassSamProgram Processed 150,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 0s. Last read position: chr3:196,472,419
INFO 2026-06-02 21:54:30 SinglePassSamProgram Processed 151,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 0s. Last read position: chr4:1,170,493
INFO 2026-06-02 21:54:31 SinglePassSamProgram Processed 152,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 0s. Last read position: chr4:2,931,825
INFO 2026-06-02 21:54:32 SinglePassSamProgram Processed 153,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 0s. Last read position: chr4:7,786,245
INFO 2026-06-02 21:54:32 SinglePassSamProgram Processed 154,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 0s. Last read position: chr4:20,541,462
INFO 2026-06-02 21:54:33 SinglePassSamProgram Processed 155,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 0s. Last read position: chr4:39,454,160
INFO 2026-06-02 21:54:34 SinglePassSamProgram Processed 156,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 0s. Last read position: chr4:48,850,038
INFO 2026-06-02 21:54:35 SinglePassSamProgram Processed 157,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 0s. Last read position: chr4:57,040,849
INFO 2026-06-02 21:54:35 SinglePassSamProgram Processed 158,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 0s. Last read position: chr4:73,742,006
INFO 2026-06-02 21:54:36 SinglePassSamProgram Processed 159,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 0s. Last read position: chr4:76,689,602
INFO 2026-06-02 21:54:37 SinglePassSamProgram Processed 160,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 0s. Last read position: chr4:84,778,514
INFO 2026-06-02 21:54:38 SinglePassSamProgram Processed 161,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 0s. Last read position: chr4:94,618,097
INFO 2026-06-02 21:54:39 SinglePassSamProgram Processed 162,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 0s. Last read position: chr4:109,757,763
INFO 2026-06-02 21:54:40 SinglePassSamProgram Processed 163,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 1s. Last read position: chr4:119,292,647
INFO 2026-06-02 21:54:41 SinglePassSamProgram Processed 164,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 1s. Last read position: chr4:139,698,439
INFO 2026-06-02 21:54:42 SinglePassSamProgram Processed 165,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 1s. Last read position: chr4:152,411,346
INFO 2026-06-02 21:54:43 SinglePassSamProgram Processed 166,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 1s. Last read position: chr4:168,878,094
INFO 2026-06-02 21:54:44 SinglePassSamProgram Processed 167,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 0s. Last read position: chr4:186,589,110
INFO 2026-06-02 21:54:44 SinglePassSamProgram Processed 168,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 0s. Last read position: chr5:889,632
INFO 2026-06-02 21:54:45 SinglePassSamProgram Processed 169,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 0s. Last read position: chr5:14,290,711
INFO 2026-06-02 21:54:46 SinglePassSamProgram Processed 170,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 0s. Last read position: chr5:14,741,869
INFO 2026-06-02 21:54:47 SinglePassSamProgram Processed 171,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 0s. Last read position: chr5:36,117,735
INFO 2026-06-02 21:54:48 SinglePassSamProgram Processed 172,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 0s. Last read position: chr5:43,381,059
INFO 2026-06-02 21:54:48 SinglePassSamProgram Processed 173,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 0s. Last read position: chr5:65,018,177
INFO 2026-06-02 21:54:49 SinglePassSamProgram Processed 174,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 0s. Last read position: chr5:72,848,431
INFO 2026-06-02 21:54:50 SinglePassSamProgram Processed 175,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 0s. Last read position: chr5:79,738,826
INFO 2026-06-02 21:54:51 SinglePassSamProgram Processed 176,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 0s. Last read position: chr5:83,540,979
INFO 2026-06-02 21:54:52 SinglePassSamProgram Processed 177,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 0s. Last read position: chr5:96,803,566
INFO 2026-06-02 21:54:53 SinglePassSamProgram Processed 178,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 0s. Last read position: chr5:119,536,509
INFO 2026-06-02 21:54:54 SinglePassSamProgram Processed 179,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 1s. Last read position: chr5:132,825,303
INFO 2026-06-02 21:54:55 SinglePassSamProgram Processed 180,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr5:136,060,902
INFO 2026-06-02 21:54:56 SinglePassSamProgram Processed 181,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 1s. Last read position: chr5:139,316,124
INFO 2026-06-02 21:54:57 SinglePassSamProgram Processed 182,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 0s. Last read position: chr5:141,415,244
INFO 2026-06-02 21:54:57 SinglePassSamProgram Processed 183,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 0s. Last read position: chr5:147,509,754
INFO 2026-06-02 21:54:58 SinglePassSamProgram Processed 184,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 0s. Last read position: chr5:150,135,779
INFO 2026-06-02 21:54:59 SinglePassSamProgram Processed 185,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 0s. Last read position: chr5:150,407,245
INFO 2026-06-02 21:55:00 SinglePassSamProgram Processed 186,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 0s. Last read position: chr5:151,666,426
INFO 2026-06-02 21:55:01 SinglePassSamProgram Processed 187,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 0s. Last read position: chr5:163,442,049
INFO 2026-06-02 21:55:01 SinglePassSamProgram Processed 188,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 0s. Last read position: chr5:171,407,744
INFO 2026-06-02 21:55:02 SinglePassSamProgram Processed 189,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 0s. Last read position: chr5:177,337,468
INFO 2026-06-02 21:55:03 SinglePassSamProgram Processed 190,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 0s. Last read position: chr5:179,724,714
INFO 2026-06-02 21:55:04 SinglePassSamProgram Processed 191,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 0s. Last read position: chr5:179,836,674
INFO 2026-06-02 21:55:04 SinglePassSamProgram Processed 192,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 0s. Last read position: chr6:3,118,728
INFO 2026-06-02 21:55:05 SinglePassSamProgram Processed 193,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 0s. Last read position: chr6:7,582,917
INFO 2026-06-02 21:55:06 SinglePassSamProgram Processed 194,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 0s. Last read position: chr6:17,850,331
INFO 2026-06-02 21:55:07 SinglePassSamProgram Processed 195,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 0s. Last read position: chr6:26,204,638
INFO 2026-06-02 21:55:07 SinglePassSamProgram Processed 196,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 0s. Last read position: chr6:29,889,370
INFO 2026-06-02 21:55:08 SinglePassSamProgram Processed 197,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 0s. Last read position: chr6:30,603,259
INFO 2026-06-02 21:55:09 SinglePassSamProgram Processed 198,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 0s. Last read position: chr6:31,271,244
INFO 2026-06-02 21:55:10 SinglePassSamProgram Processed 199,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 0s. Last read position: chr6:31,644,384
INFO 2026-06-02 21:55:11 SinglePassSamProgram Processed 200,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 0s. Last read position: chr6:31,816,385
INFO 2026-06-02 21:55:11 SinglePassSamProgram Processed 201,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 0s. Last read position: chr6:31,827,988
INFO 2026-06-02 21:55:12 SinglePassSamProgram Processed 202,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 0s. Last read position: chr6:31,829,531
INFO 2026-06-02 21:55:13 SinglePassSamProgram Processed 203,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 0s. Last read position: chr6:32,025,583
INFO 2026-06-02 21:55:14 SinglePassSamProgram Processed 204,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 0s. Last read position: chr6:32,979,978
INFO 2026-06-02 21:55:14 SinglePassSamProgram Processed 205,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 0s. Last read position: chr6:33,665,178
INFO 2026-06-02 21:55:15 SinglePassSamProgram Processed 206,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 0s. Last read position: chr6:36,210,425
INFO 2026-06-02 21:55:16 SinglePassSamProgram Processed 207,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 0s. Last read position: chr6:42,208,355
INFO 2026-06-02 21:55:17 SinglePassSamProgram Processed 208,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 0s. Last read position: chr6:43,778,409
INFO 2026-06-02 21:55:18 SinglePassSamProgram Processed 209,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 0s. Last read position: chr6:50,528,775
INFO 2026-06-02 21:55:18 SinglePassSamProgram Processed 210,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 0s. Last read position: chr6:57,148,293
INFO 2026-06-02 21:55:19 SinglePassSamProgram Processed 211,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 0s. Last read position: chr6:75,133,405
INFO 2026-06-02 21:55:20 SinglePassSamProgram Processed 212,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 0s. Last read position: chr6:82,364,985
INFO 2026-06-02 21:55:21 SinglePassSamProgram Processed 213,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 0s. Last read position: chr6:89,951,470
INFO 2026-06-02 21:55:22 SinglePassSamProgram Processed 214,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 0s. Last read position: chr6:109,370,458
INFO 2026-06-02 21:55:23 SinglePassSamProgram Processed 215,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr6:116,279,602
INFO 2026-06-02 21:55:23 SinglePassSamProgram Processed 216,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 0s. Last read position: chr6:129,611,545
INFO 2026-06-02 21:55:24 SinglePassSamProgram Processed 217,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 0s. Last read position: chr6:136,278,529
INFO 2026-06-02 21:55:25 SinglePassSamProgram Processed 218,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 0s. Last read position: chr6:144,291,775
INFO 2026-06-02 21:55:26 SinglePassSamProgram Processed 219,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 0s. Last read position: chr6:151,351,837
INFO 2026-06-02 21:55:27 SinglePassSamProgram Processed 220,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 0s. Last read position: chr6:158,503,381
INFO 2026-06-02 21:55:27 SinglePassSamProgram Processed 221,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 0s. Last read position: chr6:159,682,531
INFO 2026-06-02 21:55:28 SinglePassSamProgram Processed 222,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 0s. Last read position: chr6:166,365,973
INFO 2026-06-02 21:55:29 SinglePassSamProgram Processed 223,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 0s. Last read position: chr6:169,751,361
INFO 2026-06-02 21:55:30 SinglePassSamProgram Processed 224,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 1s. Last read position: chr7:2,607,258
INFO 2026-06-02 21:55:31 SinglePassSamProgram Processed 225,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 1s. Last read position: chr7:5,421,074
INFO 2026-06-02 21:55:32 SinglePassSamProgram Processed 226,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,349
INFO 2026-06-02 21:55:33 SinglePassSamProgram Processed 227,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 1s. Last read position: chr7:5,529,538
INFO 2026-06-02 21:55:34 SinglePassSamProgram Processed 228,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 1s. Last read position: chr7:7,969,725
INFO 2026-06-02 21:55:35 SinglePassSamProgram Processed 229,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 0s. Last read position: chr7:26,185,280
INFO 2026-06-02 21:55:36 SinglePassSamProgram Processed 230,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 0s. Last read position: chr7:32,559,172
INFO 2026-06-02 21:55:37 SinglePassSamProgram Processed 231,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 0s. Last read position: chr7:42,921,907
INFO 2026-06-02 21:55:37 SinglePassSamProgram Processed 232,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 0s. Last read position: chr7:44,116,261
INFO 2026-06-02 21:55:38 SinglePassSamProgram Processed 233,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 0s. Last read position: chr7:47,437,274
INFO 2026-06-02 21:55:39 SinglePassSamProgram Processed 234,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr7:66,092,814
INFO 2026-06-02 21:55:40 SinglePassSamProgram Processed 235,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 0s. Last read position: chr7:73,537,938
INFO 2026-06-02 21:55:41 SinglePassSamProgram Processed 236,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 0s. Last read position: chr7:75,020,062
INFO 2026-06-02 21:55:42 SinglePassSamProgram Processed 237,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 0s. Last read position: chr7:76,302,902
INFO 2026-06-02 21:55:42 SinglePassSamProgram Processed 238,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 0s. Last read position: chr7:80,663,081
INFO 2026-06-02 21:55:43 SinglePassSamProgram Processed 239,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 0s. Last read position: chr7:92,487,477
INFO 2026-06-02 21:55:44 SinglePassSamProgram Processed 240,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 1s. Last read position: chr7:94,413,133
INFO 2026-06-02 21:55:45 SinglePassSamProgram Processed 241,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 0s. Last read position: chr7:94,664,018
INFO 2026-06-02 21:55:46 SinglePassSamProgram Processed 242,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 0s. Last read position: chr7:99,423,905
INFO 2026-06-02 21:55:47 SinglePassSamProgram Processed 243,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 0s. Last read position: chr7:100,607,659
INFO 2026-06-02 21:55:47 SinglePassSamProgram Processed 244,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 0s. Last read position: chr7:100,992,263
INFO 2026-06-02 21:55:48 SinglePassSamProgram Processed 245,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 0s. Last read position: chr7:100,993,577
INFO 2026-06-02 21:55:49 SinglePassSamProgram Processed 246,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 0s. Last read position: chr7:100,994,654
INFO 2026-06-02 21:55:49 SinglePassSamProgram Processed 247,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 0s. Last read position: chr7:100,995,668
INFO 2026-06-02 21:55:50 SinglePassSamProgram Processed 248,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 0s. Last read position: chr7:100,996,400
INFO 2026-06-02 21:55:51 SinglePassSamProgram Processed 249,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 0s. Last read position: chr7:100,996,922
INFO 2026-06-02 21:55:52 SinglePassSamProgram Processed 250,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 0s. Last read position: chr7:100,997,602
INFO 2026-06-02 21:55:52 SinglePassSamProgram Processed 251,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 0s. Last read position: chr7:100,998,301
INFO 2026-06-02 21:55:53 SinglePassSamProgram Processed 252,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 0s. Last read position: chr7:100,998,904
INFO 2026-06-02 21:55:54 SinglePassSamProgram Processed 253,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 0s. Last read position: chr7:100,999,742
INFO 2026-06-02 21:55:55 SinglePassSamProgram Processed 254,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 0s. Last read position: chr7:101,000,486
INFO 2026-06-02 21:55:55 SinglePassSamProgram Processed 255,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 0s. Last read position: chr7:101,001,173
INFO 2026-06-02 21:55:56 SinglePassSamProgram Processed 256,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 0s. Last read position: chr7:101,001,778
INFO 2026-06-02 21:55:57 SinglePassSamProgram Processed 257,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 0s. Last read position: chr7:101,002,649
INFO 2026-06-02 21:55:57 SinglePassSamProgram Processed 258,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 0s. Last read position: chr7:101,004,223
INFO 2026-06-02 21:55:58 SinglePassSamProgram Processed 259,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 0s. Last read position: chr7:102,496,919
INFO 2026-06-02 21:55:59 SinglePassSamProgram Processed 260,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 0s. Last read position: chr7:107,159,447
INFO 2026-06-02 21:55:59 SinglePassSamProgram Processed 261,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 0s. Last read position: chr7:116,699,353
INFO 2026-06-02 21:56:00 SinglePassSamProgram Processed 262,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 0s. Last read position: chr7:121,015,782
INFO 2026-06-02 21:56:01 SinglePassSamProgram Processed 263,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 0s. Last read position: chr7:128,089,558
INFO 2026-06-02 21:56:02 SinglePassSamProgram Processed 264,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 0s. Last read position: chr7:131,397,244
INFO 2026-06-02 21:56:02 SinglePassSamProgram Processed 265,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 0s. Last read position: chr7:137,905,758
INFO 2026-06-02 21:56:03 SinglePassSamProgram Processed 266,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 0s. Last read position: chr7:140,785,666
INFO 2026-06-02 21:56:04 SinglePassSamProgram Processed 267,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 0s. Last read position: chr7:144,188,016
INFO 2026-06-02 21:56:05 SinglePassSamProgram Processed 268,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 0s. Last read position: chr7:150,371,424
INFO 2026-06-02 21:56:05 SinglePassSamProgram Processed 269,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 0s. Last read position: chr7:151,078,609
INFO 2026-06-02 21:56:06 SinglePassSamProgram Processed 270,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 0s. Last read position: chr7:155,298,368
INFO 2026-06-02 21:56:07 SinglePassSamProgram Processed 271,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 0s. Last read position: chr8:8,890,455
INFO 2026-06-02 21:56:08 SinglePassSamProgram Processed 272,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 0s. Last read position: chr8:20,211,181
INFO 2026-06-02 21:56:08 SinglePassSamProgram Processed 273,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 0s. Last read position: chr8:25,409,973
INFO 2026-06-02 21:56:09 SinglePassSamProgram Processed 274,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 0s. Last read position: chr8:37,697,406
INFO 2026-06-02 21:56:10 SinglePassSamProgram Processed 275,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 0s. Last read position: chr8:38,415,971
INFO 2026-06-02 21:56:11 SinglePassSamProgram Processed 276,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 0s. Last read position: chr8:42,180,510
INFO 2026-06-02 21:56:11 SinglePassSamProgram Processed 277,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 0s. Last read position: chr8:54,754,895
INFO 2026-06-02 21:56:12 SinglePassSamProgram Processed 278,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 0s. Last read position: chr8:69,563,986
INFO 2026-06-02 21:56:13 SinglePassSamProgram Processed 279,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 0s. Last read position: chr8:73,319,105
INFO 2026-06-02 21:56:14 SinglePassSamProgram Processed 280,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 0s. Last read position: chr8:92,017,272
INFO 2026-06-02 21:56:14 SinglePassSamProgram Processed 281,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 0s. Last read position: chr8:100,705,615
INFO 2026-06-02 21:56:15 SinglePassSamProgram Processed 282,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 0s. Last read position: chr8:106,684,245
INFO 2026-06-02 21:56:16 SinglePassSamProgram Processed 283,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 0s. Last read position: chr8:123,209,443
INFO 2026-06-02 21:56:17 SinglePassSamProgram Processed 284,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 0s. Last read position: chr8:127,738,904
INFO 2026-06-02 21:56:18 SinglePassSamProgram Processed 285,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 0s. Last read position: chr8:143,021,704
INFO 2026-06-02 21:56:19 SinglePassSamProgram Processed 286,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 0s. Last read position: chr8:143,858,497
INFO 2026-06-02 21:56:19 SinglePassSamProgram Processed 287,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 0s. Last read position: chr8:143,860,588
INFO 2026-06-02 21:56:20 SinglePassSamProgram Processed 288,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 0s. Last read position: chr8:143,861,961
INFO 2026-06-02 21:56:21 SinglePassSamProgram Processed 289,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 0s. Last read position: chr8:143,863,321
INFO 2026-06-02 21:56:22 SinglePassSamProgram Processed 290,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 0s. Last read position: chr8:143,864,936
INFO 2026-06-02 21:56:22 SinglePassSamProgram Processed 291,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 0s. Last read position: chr8:143,866,425
INFO 2026-06-02 21:56:23 SinglePassSamProgram Processed 292,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 0s. Last read position: chr8:143,921,437
INFO 2026-06-02 21:56:24 SinglePassSamProgram Processed 293,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 0s. Last read position: chr8:144,098,898
INFO 2026-06-02 21:56:25 SinglePassSamProgram Processed 294,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 0s. Last read position: chr9:744,494
INFO 2026-06-02 21:56:25 SinglePassSamProgram Processed 295,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 0s. Last read position: chr9:14,307,201
INFO 2026-06-02 21:56:26 SinglePassSamProgram Processed 296,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 0s. Last read position: chr9:32,418,167
INFO 2026-06-02 21:56:27 SinglePassSamProgram Processed 297,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 0s. Last read position: chr9:35,059,160
INFO 2026-06-02 21:56:28 SinglePassSamProgram Processed 298,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 0s. Last read position: chr9:35,712,068
INFO 2026-06-02 21:56:29 SinglePassSamProgram Processed 299,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 0s. Last read position: chr9:62,376,346
INFO 2026-06-02 21:56:29 SinglePassSamProgram Processed 300,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 0s. Last read position: chr9:76,708,729
INFO 2026-06-02 21:56:30 SinglePassSamProgram Processed 301,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 0s. Last read position: chr9:88,016,748
INFO 2026-06-02 21:56:31 SinglePassSamProgram Processed 302,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 0s. Last read position: chr9:93,558,607
INFO 2026-06-02 21:56:32 SinglePassSamProgram Processed 303,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 0s. Last read position: chr9:99,828,872
INFO 2026-06-02 21:56:32 SinglePassSamProgram Processed 304,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 0s. Last read position: chr9:109,428,631
INFO 2026-06-02 21:56:33 SinglePassSamProgram Processed 305,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 0s. Last read position: chr9:114,168,484
INFO 2026-06-02 21:56:34 SinglePassSamProgram Processed 306,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 0s. Last read position: chr9:121,310,759
INFO 2026-06-02 21:56:35 SinglePassSamProgram Processed 307,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 0s. Last read position: chr9:125,238,738
INFO 2026-06-02 21:56:35 SinglePassSamProgram Processed 308,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 0s. Last read position: chr9:127,935,552
INFO 2026-06-02 21:56:36 SinglePassSamProgram Processed 309,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 0s. Last read position: chr9:128,615,630
INFO 2026-06-02 21:56:37 SinglePassSamProgram Processed 310,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 0s. Last read position: chr9:130,372,357
INFO 2026-06-02 21:56:38 SinglePassSamProgram Processed 311,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 0s. Last read position: chr9:132,264,397
INFO 2026-06-02 21:56:38 SinglePassSamProgram Processed 312,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 0s. Last read position: chr9:134,691,039
INFO 2026-06-02 21:56:39 SinglePassSamProgram Processed 313,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 0s. Last read position: chr9:136,475,157
INFO 2026-06-02 21:56:40 SinglePassSamProgram Processed 314,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 0s. Last read position: chr9:137,017,822
INFO 2026-06-02 21:56:41 SinglePassSamProgram Processed 315,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 0s. Last read position: chr9:137,811,541
INFO 2026-06-02 21:56:41 SinglePassSamProgram Processed 316,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 0s. Last read position: chr10:5,796,769
INFO 2026-06-02 21:56:42 SinglePassSamProgram Processed 317,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 0s. Last read position: chr10:16,752,561
INFO 2026-06-02 21:56:43 SinglePassSamProgram Processed 318,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 0s. Last read position: chr10:24,595,733
INFO 2026-06-02 21:56:43 SinglePassSamProgram Processed 319,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 0s. Last read position: chr10:30,439,120
INFO 2026-06-02 21:56:44 SinglePassSamProgram Processed 320,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 0s. Last read position: chr10:32,034,029
INFO 2026-06-02 21:56:45 SinglePassSamProgram Processed 321,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 0s. Last read position: chr10:34,336,217
INFO 2026-06-02 21:56:46 SinglePassSamProgram Processed 322,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 0s. Last read position: chr10:46,014,469
INFO 2026-06-02 21:56:46 SinglePassSamProgram Processed 323,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 0s. Last read position: chr10:62,092,614
INFO 2026-06-02 21:56:47 SinglePassSamProgram Processed 324,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 0s. Last read position: chr10:70,885,199
INFO 2026-06-02 21:56:48 SinglePassSamProgram Processed 325,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 0s. Last read position: chr10:74,407,736
INFO 2026-06-02 21:56:49 SinglePassSamProgram Processed 326,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 0s. Last read position: chr10:77,926,233
INFO 2026-06-02 21:56:49 SinglePassSamProgram Processed 327,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 0s. Last read position: chr10:78,035,689
INFO 2026-06-02 21:56:50 SinglePassSamProgram Processed 328,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 0s. Last read position: chr10:78,040,203
INFO 2026-06-02 21:56:51 SinglePassSamProgram Processed 329,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 0s. Last read position: chr10:79,349,694
INFO 2026-06-02 21:56:52 SinglePassSamProgram Processed 330,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 0s. Last read position: chr10:80,168,987
INFO 2026-06-02 21:56:52 SinglePassSamProgram Processed 331,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 0s. Last read position: chr10:87,152,019
INFO 2026-06-02 21:56:53 SinglePassSamProgram Processed 332,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 0s. Last read position: chr10:93,325,838
INFO 2026-06-02 21:56:54 SinglePassSamProgram Processed 333,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 0s. Last read position: chr10:96,955,520
INFO 2026-06-02 21:56:54 SinglePassSamProgram Processed 334,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 0s. Last read position: chr10:102,139,771
INFO 2026-06-02 21:56:55 SinglePassSamProgram Processed 335,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 0s. Last read position: chr10:104,259,648
INFO 2026-06-02 21:56:56 SinglePassSamProgram Processed 336,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 0s. Last read position: chr10:118,009,025
INFO 2026-06-02 21:56:57 SinglePassSamProgram Processed 337,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 0s. Last read position: chr10:122,592,300
INFO 2026-06-02 21:56:57 SinglePassSamProgram Processed 338,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 0s. Last read position: chr10:133,268,078
INFO 2026-06-02 21:56:58 SinglePassSamProgram Processed 339,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 0s. Last read position: chr11:319,909
INFO 2026-06-02 21:56:59 SinglePassSamProgram Processed 340,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 0s. Last read position: chr11:674,740
INFO 2026-06-02 21:57:00 SinglePassSamProgram Processed 341,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 0s. Last read position: chr11:1,244,175
INFO 2026-06-02 21:57:00 SinglePassSamProgram Processed 342,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 0s. Last read position: chr11:1,925,103
INFO 2026-06-02 21:57:01 SinglePassSamProgram Processed 343,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 0s. Last read position: chr11:5,610,740
INFO 2026-06-02 21:57:02 SinglePassSamProgram Processed 344,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 0s. Last read position: chr11:8,699,275
INFO 2026-06-02 21:57:02 SinglePassSamProgram Processed 345,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 0s. Last read position: chr11:10,854,405
INFO 2026-06-02 21:57:03 SinglePassSamProgram Processed 346,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 0s. Last read position: chr11:17,129,300
INFO 2026-06-02 21:57:04 SinglePassSamProgram Processed 347,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 0s. Last read position: chr11:33,058,990
INFO 2026-06-02 21:57:05 SinglePassSamProgram Processed 348,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 0s. Last read position: chr11:41,021,157
INFO 2026-06-02 21:57:05 SinglePassSamProgram Processed 349,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 0s. Last read position: chr11:46,382,614
INFO 2026-06-02 21:57:06 SinglePassSamProgram Processed 350,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 0s. Last read position: chr11:47,839,982
INFO 2026-06-02 21:57:07 SinglePassSamProgram Processed 351,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 0s. Last read position: chr11:57,796,920
INFO 2026-06-02 21:57:08 SinglePassSamProgram Processed 352,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 0s. Last read position: chr11:61,325,668
INFO 2026-06-02 21:57:08 SinglePassSamProgram Processed 353,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 0s. Last read position: chr11:62,518,115
INFO 2026-06-02 21:57:09 SinglePassSamProgram Processed 354,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 0s. Last read position: chr11:62,525,459
INFO 2026-06-02 21:57:10 SinglePassSamProgram Processed 355,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 0s. Last read position: chr11:62,531,325
INFO 2026-06-02 21:57:10 SinglePassSamProgram Processed 356,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 0s. Last read position: chr11:62,663,279
INFO 2026-06-02 21:57:11 SinglePassSamProgram Processed 357,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 0s. Last read position: chr11:64,195,723
INFO 2026-06-02 21:57:12 SinglePassSamProgram Processed 358,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 0s. Last read position: chr11:64,770,015
INFO 2026-06-02 21:57:13 SinglePassSamProgram Processed 359,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 0s. Last read position: chr11:65,387,066
INFO 2026-06-02 21:57:13 SinglePassSamProgram Processed 360,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 0s. Last read position: chr11:65,654,702
INFO 2026-06-02 21:57:14 SinglePassSamProgram Processed 361,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 0s. Last read position: chr11:66,053,090
INFO 2026-06-02 21:57:15 SinglePassSamProgram Processed 362,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 0s. Last read position: chr11:67,243,064
INFO 2026-06-02 21:57:16 SinglePassSamProgram Processed 363,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 0s. Last read position: chr11:67,682,741
INFO 2026-06-02 21:57:16 SinglePassSamProgram Processed 364,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 0s. Last read position: chr11:69,643,049
INFO 2026-06-02 21:57:17 SinglePassSamProgram Processed 365,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 0s. Last read position: chr11:72,023,131
INFO 2026-06-02 21:57:18 SinglePassSamProgram Processed 366,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 0s. Last read position: chr11:75,162,658
INFO 2026-06-02 21:57:19 SinglePassSamProgram Processed 367,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 0s. Last read position: chr11:77,878,930
INFO 2026-06-02 21:57:19 SinglePassSamProgram Processed 368,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 0s. Last read position: chr11:90,283,813
INFO 2026-06-02 21:57:20 SinglePassSamProgram Processed 369,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 0s. Last read position: chr11:102,227,521
INFO 2026-06-02 21:57:21 SinglePassSamProgram Processed 370,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 0s. Last read position: chr11:111,753,553
INFO 2026-06-02 21:57:22 SinglePassSamProgram Processed 371,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 0s. Last read position: chr11:117,203,459
INFO 2026-06-02 21:57:22 SinglePassSamProgram Processed 372,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 0s. Last read position: chr11:118,628,434
INFO 2026-06-02 21:57:23 SinglePassSamProgram Processed 373,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 0s. Last read position: chr11:119,420,182
INFO 2026-06-02 21:57:24 SinglePassSamProgram Processed 374,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 0s. Last read position: chr11:124,638,567
INFO 2026-06-02 21:57:24 SinglePassSamProgram Processed 375,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 0s. Last read position: chr11:130,159,989
INFO 2026-06-02 21:57:25 SinglePassSamProgram Processed 376,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 0s. Last read position: chr12:1,780,563
INFO 2026-06-02 21:57:26 SinglePassSamProgram Processed 377,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 0s. Last read position: chr12:6,492,288
INFO 2026-06-02 21:57:27 SinglePassSamProgram Processed 378,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 0s. Last read position: chr12:6,939,089
INFO 2026-06-02 21:57:27 SinglePassSamProgram Processed 379,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 0s. Last read position: chr12:8,049,432
INFO 2026-06-02 21:57:28 SinglePassSamProgram Processed 380,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 0s. Last read position: chr12:12,162,262
INFO 2026-06-02 21:57:29 SinglePassSamProgram Processed 381,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 0s. Last read position: chr12:21,475,752
INFO 2026-06-02 21:57:30 SinglePassSamProgram Processed 382,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 0s. Last read position: chr12:42,097,951
INFO 2026-06-02 21:57:31 SinglePassSamProgram Processed 383,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 0s. Last read position: chr12:47,964,208
INFO 2026-06-02 21:57:31 SinglePassSamProgram Processed 384,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 0s. Last read position: chr12:49,128,237
INFO 2026-06-02 21:57:32 SinglePassSamProgram Processed 385,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 0s. Last read position: chr12:49,759,234
INFO 2026-06-02 21:57:33 SinglePassSamProgram Processed 386,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 0s. Last read position: chr12:52,054,803
INFO 2026-06-02 21:57:34 SinglePassSamProgram Processed 387,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 0s. Last read position: chr12:52,952,292
INFO 2026-06-02 21:57:34 SinglePassSamProgram Processed 388,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 0s. Last read position: chr12:53,446,046
INFO 2026-06-02 21:57:35 SinglePassSamProgram Processed 389,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 0s. Last read position: chr12:54,397,405
INFO 2026-06-02 21:57:36 SinglePassSamProgram Processed 390,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 0s. Last read position: chr12:56,117,492
INFO 2026-06-02 21:57:37 SinglePassSamProgram Processed 391,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 0s. Last read position: chr12:56,582,094
INFO 2026-06-02 21:57:37 SinglePassSamProgram Processed 392,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 0s. Last read position: chr12:57,094,594
INFO 2026-06-02 21:57:38 SinglePassSamProgram Processed 393,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 0s. Last read position: chr12:57,173,957
INFO 2026-06-02 21:57:39 SinglePassSamProgram Processed 394,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 0s. Last read position: chr12:57,235,477
INFO 2026-06-02 21:57:39 SinglePassSamProgram Processed 395,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 0s. Last read position: chr12:62,467,297
INFO 2026-06-02 21:57:40 SinglePassSamProgram Processed 396,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 0s. Last read position: chr12:69,589,663
INFO 2026-06-02 21:57:41 SinglePassSamProgram Processed 397,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 0s. Last read position: chr12:76,369,726
INFO 2026-06-02 21:57:42 SinglePassSamProgram Processed 398,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 0s. Last read position: chr12:92,145,445
INFO 2026-06-02 21:57:42 SinglePassSamProgram Processed 399,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 0s. Last read position: chr12:100,083,066
INFO 2026-06-02 21:57:43 SinglePassSamProgram Processed 400,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 0s. Last read position: chr12:104,325,421
INFO 2026-06-02 21:57:44 SinglePassSamProgram Processed 401,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 0s. Last read position: chr12:110,019,302
INFO 2026-06-02 21:57:45 SinglePassSamProgram Processed 402,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 0s. Last read position: chr12:112,265,878
INFO 2026-06-02 21:57:45 SinglePassSamProgram Processed 403,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 0s. Last read position: chr12:118,079,529
INFO 2026-06-02 21:57:46 SinglePassSamProgram Processed 404,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 0s. Last read position: chr12:120,687,450
INFO 2026-06-02 21:57:47 SinglePassSamProgram Processed 405,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 0s. Last read position: chr12:122,768,877
INFO 2026-06-02 21:57:48 SinglePassSamProgram Processed 406,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 0s. Last read position: chr12:124,362,193
INFO 2026-06-02 21:57:48 SinglePassSamProgram Processed 407,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 0s. Last read position: chr12:132,570,337
INFO 2026-06-02 21:57:49 SinglePassSamProgram Processed 408,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 0s. Last read position: chr13:20,601,803
INFO 2026-06-02 21:57:50 SinglePassSamProgram Processed 409,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 0s. Last read position: chr13:27,622,654
INFO 2026-06-02 21:57:50 SinglePassSamProgram Processed 410,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 0s. Last read position: chr13:37,029,767
INFO 2026-06-02 21:57:51 SinglePassSamProgram Processed 411,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 0s. Last read position: chr13:42,302,620
INFO 2026-06-02 21:57:52 SinglePassSamProgram Processed 412,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 0s. Last read position: chr13:48,233,435
INFO 2026-06-02 21:57:53 SinglePassSamProgram Processed 413,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 0s. Last read position: chr13:72,777,459
INFO 2026-06-02 21:57:53 SinglePassSamProgram Processed 414,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 0s. Last read position: chr13:77,263,990
INFO 2026-06-02 21:57:54 SinglePassSamProgram Processed 415,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 0s. Last read position: chr13:99,562,818
INFO 2026-06-02 21:57:55 SinglePassSamProgram Processed 416,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 0s. Last read position: chr13:110,187,285
INFO 2026-06-02 21:57:56 SinglePassSamProgram Processed 417,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 0s. Last read position: chr13:110,524,064
INFO 2026-06-02 21:57:56 SinglePassSamProgram Processed 418,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 0s. Last read position: chr14:20,373,576
INFO 2026-06-02 21:57:57 SinglePassSamProgram Processed 419,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 0s. Last read position: chr14:21,525,595
INFO 2026-06-02 21:57:58 SinglePassSamProgram Processed 420,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 0s. Last read position: chr14:23,062,247
INFO 2026-06-02 21:57:59 SinglePassSamProgram Processed 421,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 0s. Last read position: chr14:24,218,197
INFO 2026-06-02 21:57:59 SinglePassSamProgram Processed 422,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 0s. Last read position: chr14:34,597,633
INFO 2026-06-02 21:58:00 SinglePassSamProgram Processed 423,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 0s. Last read position: chr14:49,618,927
INFO 2026-06-02 21:58:01 SinglePassSamProgram Processed 424,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 0s. Last read position: chr14:53,949,945
INFO 2026-06-02 21:58:02 SinglePassSamProgram Processed 425,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 0s. Last read position: chr14:58,306,014
INFO 2026-06-02 21:58:02 SinglePassSamProgram Processed 426,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 0s. Last read position: chr14:64,742,000
INFO 2026-06-02 21:58:03 SinglePassSamProgram Processed 427,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 0s. Last read position: chr14:68,885,470
INFO 2026-06-02 21:58:04 SinglePassSamProgram Processed 428,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 0s. Last read position: chr14:73,297,214
INFO 2026-06-02 21:58:05 SinglePassSamProgram Processed 429,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 0s. Last read position: chr14:75,147,664
INFO 2026-06-02 21:58:06 SinglePassSamProgram Processed 430,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 0s. Last read position: chr14:82,692,763
INFO 2026-06-02 21:58:06 SinglePassSamProgram Processed 431,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 0s. Last read position: chr14:93,251,498
INFO 2026-06-02 21:58:07 SinglePassSamProgram Processed 432,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 0s. Last read position: chr14:101,818,986
INFO 2026-06-02 21:58:08 SinglePassSamProgram Processed 433,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 0s. Last read position: chr14:102,431,804
INFO 2026-06-02 21:58:09 SinglePassSamProgram Processed 434,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 0s. Last read position: chr14:104,714,323
INFO 2026-06-02 21:58:09 SinglePassSamProgram Processed 435,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 0s. Last read position: chr14:104,944,551
INFO 2026-06-02 21:58:10 SinglePassSamProgram Processed 436,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 0s. Last read position: chr14:104,953,600
INFO 2026-06-02 21:58:11 SinglePassSamProgram Processed 437,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 0s. Last read position: chr14:105,741,636
INFO 2026-06-02 21:58:11 SinglePassSamProgram Processed 438,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 0s. Last read position: chr15:28,292,905
INFO 2026-06-02 21:58:12 SinglePassSamProgram Processed 439,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 0s. Last read position: chr15:32,732,006
INFO 2026-06-02 21:58:13 SinglePassSamProgram Processed 440,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 0s. Last read position: chr15:34,934,570
INFO 2026-06-02 21:58:14 SinglePassSamProgram Processed 441,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 0s. Last read position: chr15:40,288,740
INFO 2026-06-02 21:58:14 SinglePassSamProgram Processed 442,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 0s. Last read position: chr15:41,736,684
INFO 2026-06-02 21:58:15 SinglePassSamProgram Processed 443,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 0s. Last read position: chr15:43,527,617
INFO 2026-06-02 21:58:16 SinglePassSamProgram Processed 444,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 0s. Last read position: chr15:43,793,831
INFO 2026-06-02 21:58:17 SinglePassSamProgram Processed 445,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 0s. Last read position: chr15:45,662,066
INFO 2026-06-02 21:58:17 SinglePassSamProgram Processed 446,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 0s. Last read position: chr15:51,488,613
INFO 2026-06-02 21:58:18 SinglePassSamProgram Processed 447,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 0s. Last read position: chr15:58,673,740
INFO 2026-06-02 21:58:19 SinglePassSamProgram Processed 448,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 0s. Last read position: chr15:61,964,798
INFO 2026-06-02 21:58:20 SinglePassSamProgram Processed 449,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 0s. Last read position: chr15:64,155,862
INFO 2026-06-02 21:58:20 SinglePassSamProgram Processed 450,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 0s. Last read position: chr15:66,501,499
INFO 2026-06-02 21:58:21 SinglePassSamProgram Processed 451,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 0s. Last read position: chr15:71,085,736
INFO 2026-06-02 21:58:22 SinglePassSamProgram Processed 452,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 0s. Last read position: chr15:73,994,794
INFO 2026-06-02 21:58:23 SinglePassSamProgram Processed 453,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 0s. Last read position: chr15:75,206,697
INFO 2026-06-02 21:58:23 SinglePassSamProgram Processed 454,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 0s. Last read position: chr15:78,025,386
INFO 2026-06-02 21:58:24 SinglePassSamProgram Processed 455,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 0s. Last read position: chr15:82,810,031
INFO 2026-06-02 21:58:25 SinglePassSamProgram Processed 456,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 0s. Last read position: chr15:88,901,613
INFO 2026-06-02 21:58:25 SinglePassSamProgram Processed 457,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 0s. Last read position: chr15:90,477,804
INFO 2026-06-02 21:58:26 SinglePassSamProgram Processed 458,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 0s. Last read position: chr15:99,129,891
INFO 2026-06-02 21:58:27 SinglePassSamProgram Processed 459,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 0s. Last read position: chr16:371,986
INFO 2026-06-02 21:58:28 SinglePassSamProgram Processed 460,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 0s. Last read position: chr16:1,209,105
INFO 2026-06-02 21:58:28 SinglePassSamProgram Processed 461,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 0s. Last read position: chr16:2,036,954
INFO 2026-06-02 21:58:29 SinglePassSamProgram Processed 462,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 0s. Last read position: chr16:2,597,172
INFO 2026-06-02 21:58:30 SinglePassSamProgram Processed 463,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 0s. Last read position: chr16:2,971,596
INFO 2026-06-02 21:58:31 SinglePassSamProgram Processed 464,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 0s. Last read position: chr16:4,114,733
INFO 2026-06-02 21:58:31 SinglePassSamProgram Processed 465,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 0s. Last read position: chr16:8,921,156
INFO 2026-06-02 21:58:32 SinglePassSamProgram Processed 466,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 0s. Last read position: chr16:14,848,917
INFO 2026-06-02 21:58:33 SinglePassSamProgram Processed 467,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 0s. Last read position: chr16:15,704,110
INFO 2026-06-02 21:58:33 SinglePassSamProgram Processed 468,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 0s. Last read position: chr16:15,741,550
INFO 2026-06-02 21:58:34 SinglePassSamProgram Processed 469,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 0s. Last read position: chr16:16,138,500
INFO 2026-06-02 21:58:35 SinglePassSamProgram Processed 470,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 0s. Last read position: chr16:18,350,074
INFO 2026-06-02 21:58:36 SinglePassSamProgram Processed 471,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 0s. Last read position: chr16:18,984,066
INFO 2026-06-02 21:58:36 SinglePassSamProgram Processed 472,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 0s. Last read position: chr16:21,479,542
INFO 2026-06-02 21:58:37 SinglePassSamProgram Processed 473,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 0s. Last read position: chr16:22,513,768
INFO 2026-06-02 21:58:38 SinglePassSamProgram Processed 474,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 0s. Last read position: chr16:24,806,279
INFO 2026-06-02 21:58:38 SinglePassSamProgram Processed 475,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 0s. Last read position: chr16:28,731,875
INFO 2026-06-02 21:58:39 SinglePassSamProgram Processed 476,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 0s. Last read position: chr16:29,455,844
INFO 2026-06-02 21:58:40 SinglePassSamProgram Processed 477,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 0s. Last read position: chr16:29,859,125
INFO 2026-06-02 21:58:41 SinglePassSamProgram Processed 478,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 0s. Last read position: chr16:30,121,954
INFO 2026-06-02 21:58:41 SinglePassSamProgram Processed 479,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 0s. Last read position: chr16:30,664,323
INFO 2026-06-02 21:58:42 SinglePassSamProgram Processed 480,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 0s. Last read position: chr16:31,180,152
INFO 2026-06-02 21:58:43 SinglePassSamProgram Processed 481,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 0s. Last read position: chr16:46,956,932
INFO 2026-06-02 21:58:44 SinglePassSamProgram Processed 482,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 0s. Last read position: chr16:55,482,946
INFO 2026-06-02 21:58:44 SinglePassSamProgram Processed 483,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 0s. Last read position: chr16:57,473,419
INFO 2026-06-02 21:58:45 SinglePassSamProgram Processed 484,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 0s. Last read position: chr16:65,004,747
INFO 2026-06-02 21:58:46 SinglePassSamProgram Processed 485,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 0s. Last read position: chr16:67,542,228
INFO 2026-06-02 21:58:47 SinglePassSamProgram Processed 486,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 0s. Last read position: chr16:68,819,316
INFO 2026-06-02 21:58:47 SinglePassSamProgram Processed 487,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 0s. Last read position: chr16:70,267,660
INFO 2026-06-02 21:58:48 SinglePassSamProgram Processed 488,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 0s. Last read position: chr16:74,301,558
INFO 2026-06-02 21:58:49 SinglePassSamProgram Processed 489,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 0s. Last read position: chr16:81,705,552
INFO 2026-06-02 21:58:50 SinglePassSamProgram Processed 490,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 0s. Last read position: chr16:87,412,678
INFO 2026-06-02 21:58:50 SinglePassSamProgram Processed 491,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 0s. Last read position: chr16:88,734,425
INFO 2026-06-02 21:58:51 SinglePassSamProgram Processed 492,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 0s. Last read position: chr16:89,860,777
INFO 2026-06-02 21:58:52 SinglePassSamProgram Processed 493,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 0s. Last read position: chr17:1,470,638
INFO 2026-06-02 21:58:53 SinglePassSamProgram Processed 494,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 0s. Last read position: chr17:2,698,386
INFO 2026-06-02 21:58:53 SinglePassSamProgram Processed 495,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 0s. Last read position: chr17:4,946,809
INFO 2026-06-02 21:58:54 SinglePassSamProgram Processed 496,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 0s. Last read position: chr17:7,285,824
INFO 2026-06-02 21:58:55 SinglePassSamProgram Processed 497,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 0s. Last read position: chr17:7,579,987
INFO 2026-06-02 21:58:56 SinglePassSamProgram Processed 498,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 0s. Last read position: chr17:10,503,042
INFO 2026-06-02 21:58:56 SinglePassSamProgram Processed 499,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 0s. Last read position: chr17:16,382,390
INFO 2026-06-02 21:58:57 SinglePassSamProgram Processed 500,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 0s. Last read position: chr17:19,003,835
INFO 2026-06-02 21:58:58 SinglePassSamProgram Processed 501,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 0s. Last read position: chr17:28,714,648
INFO 2026-06-02 21:58:59 SinglePassSamProgram Processed 502,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 0s. Last read position: chr17:31,358,519
INFO 2026-06-02 21:58:59 SinglePassSamProgram Processed 503,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 0s. Last read position: chr17:36,211,152
INFO 2026-06-02 21:59:00 SinglePassSamProgram Processed 504,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 0s. Last read position: chr17:38,870,151
INFO 2026-06-02 21:59:01 SinglePassSamProgram Processed 505,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 0s. Last read position: chr17:39,723,953
INFO 2026-06-02 21:59:01 SinglePassSamProgram Processed 506,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 0s. Last read position: chr17:40,630,738
INFO 2026-06-02 21:59:02 SinglePassSamProgram Processed 507,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 0s. Last read position: chr17:42,212,116
INFO 2026-06-02 21:59:03 SinglePassSamProgram Processed 508,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 0s. Last read position: chr17:43,180,794
INFO 2026-06-02 21:59:04 SinglePassSamProgram Processed 509,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 0s. Last read position: chr17:45,113,465
INFO 2026-06-02 21:59:05 SinglePassSamProgram Processed 510,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 0s. Last read position: chr17:47,916,504
INFO 2026-06-02 21:59:05 SinglePassSamProgram Processed 511,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 0s. Last read position: chr17:50,185,453
INFO 2026-06-02 21:59:06 SinglePassSamProgram Processed 512,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 0s. Last read position: chr17:50,186,397
INFO 2026-06-02 21:59:07 SinglePassSamProgram Processed 513,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 0s. Last read position: chr17:50,187,014
INFO 2026-06-02 21:59:08 SinglePassSamProgram Processed 514,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 0s. Last read position: chr17:50,187,927
INFO 2026-06-02 21:59:08 SinglePassSamProgram Processed 515,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 0s. Last read position: chr17:50,188,576
INFO 2026-06-02 21:59:09 SinglePassSamProgram Processed 516,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 0s. Last read position: chr17:50,189,218
INFO 2026-06-02 21:59:10 SinglePassSamProgram Processed 517,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 0s. Last read position: chr17:50,189,518
INFO 2026-06-02 21:59:11 SinglePassSamProgram Processed 518,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 0s. Last read position: chr17:50,190,064
INFO 2026-06-02 21:59:12 SinglePassSamProgram Processed 519,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 0s. Last read position: chr17:50,191,414
INFO 2026-06-02 21:59:12 SinglePassSamProgram Processed 520,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 0s. Last read position: chr17:50,192,676
INFO 2026-06-02 21:59:13 SinglePassSamProgram Processed 521,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 0s. Last read position: chr17:50,194,014
INFO 2026-06-02 21:59:14 SinglePassSamProgram Processed 522,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 0s. Last read position: chr17:50,194,576
INFO 2026-06-02 21:59:15 SinglePassSamProgram Processed 523,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 0s. Last read position: chr17:50,195,267
INFO 2026-06-02 21:59:16 SinglePassSamProgram Processed 524,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 0s. Last read position: chr17:50,195,969
INFO 2026-06-02 21:59:16 SinglePassSamProgram Processed 525,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 0s. Last read position: chr17:50,196,494
INFO 2026-06-02 21:59:17 SinglePassSamProgram Processed 526,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 0s. Last read position: chr17:50,197,737
INFO 2026-06-02 21:59:18 SinglePassSamProgram Processed 527,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 0s. Last read position: chr17:50,199,260
INFO 2026-06-02 21:59:19 SinglePassSamProgram Processed 528,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 0s. Last read position: chr17:50,199,820
INFO 2026-06-02 21:59:19 SinglePassSamProgram Processed 529,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 0s. Last read position: chr17:51,168,279
INFO 2026-06-02 21:59:20 SinglePassSamProgram Processed 530,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 0s. Last read position: chr17:59,664,798
INFO 2026-06-02 21:59:21 SinglePassSamProgram Processed 531,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 0s. Last read position: chr17:62,688,891
INFO 2026-06-02 21:59:22 SinglePassSamProgram Processed 532,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 0s. Last read position: chr17:67,190,290
INFO 2026-06-02 21:59:22 SinglePassSamProgram Processed 533,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 0s. Last read position: chr17:74,209,217
INFO 2026-06-02 21:59:23 SinglePassSamProgram Processed 534,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 0s. Last read position: chr17:75,778,575
INFO 2026-06-02 21:59:24 SinglePassSamProgram Processed 535,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 0s. Last read position: chr17:77,482,171
INFO 2026-06-02 21:59:25 SinglePassSamProgram Processed 536,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 0s. Last read position: chr17:80,135,372
INFO 2026-06-02 21:59:25 SinglePassSamProgram Processed 537,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 0s. Last read position: chr17:81,686,361
INFO 2026-06-02 21:59:26 SinglePassSamProgram Processed 538,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 0s. Last read position: chr17:82,236,183
INFO 2026-06-02 21:59:27 SinglePassSamProgram Processed 539,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 0s. Last read position: chr18:8,609,837
INFO 2026-06-02 21:59:28 SinglePassSamProgram Processed 540,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 0s. Last read position: chr18:23,554,793
INFO 2026-06-02 21:59:29 SinglePassSamProgram Processed 541,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 0s. Last read position: chr18:36,145,007
INFO 2026-06-02 21:59:29 SinglePassSamProgram Processed 542,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 0s. Last read position: chr18:55,269,939
INFO 2026-06-02 21:59:30 SinglePassSamProgram Processed 543,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 0s. Last read position: chr18:74,635,495
INFO 2026-06-02 21:59:31 SinglePassSamProgram Processed 544,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 0s. Last read position: chr19:804,638
INFO 2026-06-02 21:59:31 SinglePassSamProgram Processed 545,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 0s. Last read position: chr19:1,255,524
INFO 2026-06-02 21:59:32 SinglePassSamProgram Processed 546,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 0s. Last read position: chr19:2,116,215
INFO 2026-06-02 21:59:33 SinglePassSamProgram Processed 547,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 0s. Last read position: chr19:3,959,230
INFO 2026-06-02 21:59:34 SinglePassSamProgram Processed 548,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 0s. Last read position: chr19:5,611,390
INFO 2026-06-02 21:59:35 SinglePassSamProgram Processed 549,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 0s. Last read position: chr19:6,694,567
INFO 2026-06-02 21:59:35 SinglePassSamProgram Processed 550,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 0s. Last read position: chr19:8,305,093
INFO 2026-06-02 21:59:36 SinglePassSamProgram Processed 551,000,000 records. Elapsed time: 00:07:10s. Time for last 1,000,000: 0s. Last read position: chr19:10,354,196
INFO 2026-06-02 21:59:37 SinglePassSamProgram Processed 552,000,000 records. Elapsed time: 00:07:10s. Time for last 1,000,000: 0s. Last read position: chr19:11,194,002
INFO 2026-06-02 21:59:38 SinglePassSamProgram Processed 553,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 0s. Last read position: chr19:12,792,325
INFO 2026-06-02 21:59:38 SinglePassSamProgram Processed 554,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 0s. Last read position: chr19:14,100,826
INFO 2026-06-02 21:59:39 SinglePassSamProgram Processed 555,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 0s. Last read position: chr19:15,161,702
INFO 2026-06-02 21:59:40 SinglePassSamProgram Processed 556,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 0s. Last read position: chr19:16,076,111
INFO 2026-06-02 21:59:40 SinglePassSamProgram Processed 557,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 0s. Last read position: chr19:17,784,217
INFO 2026-06-02 21:59:41 SinglePassSamProgram Processed 558,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 0s. Last read position: chr19:18,782,858
INFO 2026-06-02 21:59:42 SinglePassSamProgram Processed 559,000,000 records. Elapsed time: 00:07:16s. Time for last 1,000,000: 0s. Last read position: chr19:29,207,830
INFO 2026-06-02 21:59:43 SinglePassSamProgram Processed 560,000,000 records. Elapsed time: 00:07:16s. Time for last 1,000,000: 0s. Last read position: chr19:34,959,189
INFO 2026-06-02 21:59:43 SinglePassSamProgram Processed 561,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 0s. Last read position: chr19:35,618,398
INFO 2026-06-02 21:59:44 SinglePassSamProgram Processed 562,000,000 records. Elapsed time: 00:07:18s. Time for last 1,000,000: 0s. Last read position: chr19:38,164,525
INFO 2026-06-02 21:59:45 SinglePassSamProgram Processed 563,000,000 records. Elapsed time: 00:07:19s. Time for last 1,000,000: 0s. Last read position: chr19:38,718,033
INFO 2026-06-02 21:59:46 SinglePassSamProgram Processed 564,000,000 records. Elapsed time: 00:07:19s. Time for last 1,000,000: 0s. Last read position: chr19:39,375,810
INFO 2026-06-02 21:59:46 SinglePassSamProgram Processed 565,000,000 records. Elapsed time: 00:07:20s. Time for last 1,000,000: 0s. Last read position: chr19:39,875,575
INFO 2026-06-02 21:59:47 SinglePassSamProgram Processed 566,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 0s. Last read position: chr19:40,626,972
INFO 2026-06-02 21:59:48 SinglePassSamProgram Processed 567,000,000 records. Elapsed time: 00:07:22s. Time for last 1,000,000: 0s. Last read position: chr19:41,708,660
INFO 2026-06-02 21:59:49 SinglePassSamProgram Processed 568,000,000 records. Elapsed time: 00:07:22s. Time for last 1,000,000: 0s. Last read position: chr19:41,715,026
INFO 2026-06-02 21:59:49 SinglePassSamProgram Processed 569,000,000 records. Elapsed time: 00:07:23s. Time for last 1,000,000: 0s. Last read position: chr19:41,717,540
INFO 2026-06-02 21:59:50 SinglePassSamProgram Processed 570,000,000 records. Elapsed time: 00:07:24s. Time for last 1,000,000: 0s. Last read position: chr19:41,719,998
INFO 2026-06-02 21:59:51 SinglePassSamProgram Processed 571,000,000 records. Elapsed time: 00:07:24s. Time for last 1,000,000: 0s. Last read position: chr19:41,756,824
INFO 2026-06-02 21:59:51 SinglePassSamProgram Processed 572,000,000 records. Elapsed time: 00:07:25s. Time for last 1,000,000: 0s. Last read position: chr19:42,249,620
INFO 2026-06-02 21:59:52 SinglePassSamProgram Processed 573,000,000 records. Elapsed time: 00:07:26s. Time for last 1,000,000: 0s. Last read position: chr19:42,521,200
INFO 2026-06-02 21:59:53 SinglePassSamProgram Processed 574,000,000 records. Elapsed time: 00:07:26s. Time for last 1,000,000: 0s. Last read position: chr19:44,893,855
INFO 2026-06-02 21:59:54 SinglePassSamProgram Processed 575,000,000 records. Elapsed time: 00:07:27s. Time for last 1,000,000: 0s. Last read position: chr19:45,688,428
INFO 2026-06-02 21:59:54 SinglePassSamProgram Processed 576,000,000 records. Elapsed time: 00:07:28s. Time for last 1,000,000: 0s. Last read position: chr19:47,090,140
INFO 2026-06-02 21:59:55 SinglePassSamProgram Processed 577,000,000 records. Elapsed time: 00:07:29s. Time for last 1,000,000: 0s. Last read position: chr19:48,615,366
INFO 2026-06-02 21:59:56 SinglePassSamProgram Processed 578,000,000 records. Elapsed time: 00:07:30s. Time for last 1,000,000: 0s. Last read position: chr19:49,145,943
INFO 2026-06-02 21:59:57 SinglePassSamProgram Processed 579,000,000 records. Elapsed time: 00:07:30s. Time for last 1,000,000: 0s. Last read position: chr19:49,635,571
INFO 2026-06-02 21:59:57 SinglePassSamProgram Processed 580,000,000 records. Elapsed time: 00:07:31s. Time for last 1,000,000: 0s. Last read position: chr19:50,259,198
INFO 2026-06-02 21:59:58 SinglePassSamProgram Processed 581,000,000 records. Elapsed time: 00:07:32s. Time for last 1,000,000: 0s. Last read position: chr19:52,290,763
INFO 2026-06-02 21:59:59 SinglePassSamProgram Processed 582,000,000 records. Elapsed time: 00:07:32s. Time for last 1,000,000: 0s. Last read position: chr19:54,356,398
INFO 2026-06-02 22:00:00 SinglePassSamProgram Processed 583,000,000 records. Elapsed time: 00:07:33s. Time for last 1,000,000: 0s. Last read position: chr19:55,517,858
INFO 2026-06-02 22:00:00 SinglePassSamProgram Processed 584,000,000 records. Elapsed time: 00:07:34s. Time for last 1,000,000: 0s. Last read position: chr19:58,230,449
INFO 2026-06-02 22:00:01 SinglePassSamProgram Processed 585,000,000 records. Elapsed time: 00:07:35s. Time for last 1,000,000: 0s. Last read position: chr20:2,751,767
INFO 2026-06-02 22:00:02 SinglePassSamProgram Processed 586,000,000 records. Elapsed time: 00:07:36s. Time for last 1,000,000: 0s. Last read position: chr20:10,651,691
INFO 2026-06-02 22:00:03 SinglePassSamProgram Processed 587,000,000 records. Elapsed time: 00:07:36s. Time for last 1,000,000: 0s. Last read position: chr20:21,303,355
INFO 2026-06-02 22:00:03 SinglePassSamProgram Processed 588,000,000 records. Elapsed time: 00:07:37s. Time for last 1,000,000: 0s. Last read position: chr20:31,665,931
INFO 2026-06-02 22:00:04 SinglePassSamProgram Processed 589,000,000 records. Elapsed time: 00:07:38s. Time for last 1,000,000: 0s. Last read position: chr20:34,294,121
INFO 2026-06-02 22:00:05 SinglePassSamProgram Processed 590,000,000 records. Elapsed time: 00:07:38s. Time for last 1,000,000: 0s. Last read position: chr20:35,627,339
INFO 2026-06-02 22:00:05 SinglePassSamProgram Processed 591,000,000 records. Elapsed time: 00:07:39s. Time for last 1,000,000: 0s. Last read position: chr20:36,793,863
INFO 2026-06-02 22:00:06 SinglePassSamProgram Processed 592,000,000 records. Elapsed time: 00:07:40s. Time for last 1,000,000: 0s. Last read position: chr20:41,174,264
INFO 2026-06-02 22:00:07 SinglePassSamProgram Processed 593,000,000 records. Elapsed time: 00:07:41s. Time for last 1,000,000: 0s. Last read position: chr20:45,327,285
INFO 2026-06-02 22:00:08 SinglePassSamProgram Processed 594,000,000 records. Elapsed time: 00:07:41s. Time for last 1,000,000: 0s. Last read position: chr20:45,897,753
INFO 2026-06-02 22:00:08 SinglePassSamProgram Processed 595,000,000 records. Elapsed time: 00:07:42s. Time for last 1,000,000: 0s. Last read position: chr20:49,088,036
INFO 2026-06-02 22:00:09 SinglePassSamProgram Processed 596,000,000 records. Elapsed time: 00:07:43s. Time for last 1,000,000: 0s. Last read position: chr20:51,601,237
INFO 2026-06-02 22:00:10 SinglePassSamProgram Processed 597,000,000 records. Elapsed time: 00:07:44s. Time for last 1,000,000: 0s. Last read position: chr20:58,359,690
INFO 2026-06-02 22:00:11 SinglePassSamProgram Processed 598,000,000 records. Elapsed time: 00:07:44s. Time for last 1,000,000: 0s. Last read position: chr20:62,139,135
INFO 2026-06-02 22:00:11 SinglePassSamProgram Processed 599,000,000 records. Elapsed time: 00:07:45s. Time for last 1,000,000: 0s. Last read position: chr20:62,812,611
INFO 2026-06-02 22:00:12 SinglePassSamProgram Processed 600,000,000 records. Elapsed time: 00:07:46s. Time for last 1,000,000: 0s. Last read position: chr20:63,565,654
INFO 2026-06-02 22:00:13 SinglePassSamProgram Processed 601,000,000 records. Elapsed time: 00:07:47s. Time for last 1,000,000: 0s. Last read position: chr21:8,214,675
INFO 2026-06-02 22:00:13 SinglePassSamProgram Processed 602,000,000 records. Elapsed time: 00:07:47s. Time for last 1,000,000: 0s. Last read position: chr21:8,397,780
INFO 2026-06-02 22:00:14 SinglePassSamProgram Processed 603,000,000 records. Elapsed time: 00:07:48s. Time for last 1,000,000: 0s. Last read position: chr21:8,444,117
INFO 2026-06-02 22:00:15 SinglePassSamProgram Processed 604,000,000 records. Elapsed time: 00:07:49s. Time for last 1,000,000: 0s. Last read position: chr21:29,326,314
INFO 2026-06-02 22:00:16 SinglePassSamProgram Processed 605,000,000 records. Elapsed time: 00:07:49s. Time for last 1,000,000: 0s. Last read position: chr21:36,072,740
INFO 2026-06-02 22:00:16 SinglePassSamProgram Processed 606,000,000 records. Elapsed time: 00:07:50s. Time for last 1,000,000: 0s. Last read position: chr21:39,392,998
INFO 2026-06-02 22:00:17 SinglePassSamProgram Processed 607,000,000 records. Elapsed time: 00:07:51s. Time for last 1,000,000: 0s. Last read position: chr21:44,228,381
INFO 2026-06-02 22:00:18 SinglePassSamProgram Processed 608,000,000 records. Elapsed time: 00:07:52s. Time for last 1,000,000: 0s. Last read position: chr21:45,992,378
INFO 2026-06-02 22:00:19 SinglePassSamProgram Processed 609,000,000 records. Elapsed time: 00:07:52s. Time for last 1,000,000: 0s. Last read position: chr21:46,246,780
INFO 2026-06-02 22:00:19 SinglePassSamProgram Processed 610,000,000 records. Elapsed time: 00:07:53s. Time for last 1,000,000: 0s. Last read position: chr22:20,585,007
INFO 2026-06-02 22:00:20 SinglePassSamProgram Processed 611,000,000 records. Elapsed time: 00:07:54s. Time for last 1,000,000: 0s. Last read position: chr22:23,782,376
INFO 2026-06-02 22:00:21 SinglePassSamProgram Processed 612,000,000 records. Elapsed time: 00:07:54s. Time for last 1,000,000: 0s. Last read position: chr22:29,278,138
INFO 2026-06-02 22:00:22 SinglePassSamProgram Processed 613,000,000 records. Elapsed time: 00:07:55s. Time for last 1,000,000: 0s. Last read position: chr22:31,091,783
INFO 2026-06-02 22:00:22 SinglePassSamProgram Processed 614,000,000 records. Elapsed time: 00:07:56s. Time for last 1,000,000: 0s. Last read position: chr22:36,285,681
INFO 2026-06-02 22:00:23 SinglePassSamProgram Processed 615,000,000 records. Elapsed time: 00:07:57s. Time for last 1,000,000: 0s. Last read position: chr22:37,024,677
INFO 2026-06-02 22:00:24 SinglePassSamProgram Processed 616,000,000 records. Elapsed time: 00:07:57s. Time for last 1,000,000: 0s. Last read position: chr22:38,487,996
INFO 2026-06-02 22:00:24 SinglePassSamProgram Processed 617,000,000 records. Elapsed time: 00:07:58s. Time for last 1,000,000: 0s. Last read position: chr22:41,149,856
INFO 2026-06-02 22:00:25 SinglePassSamProgram Processed 618,000,000 records. Elapsed time: 00:07:59s. Time for last 1,000,000: 0s. Last read position: chr22:42,693,048
INFO 2026-06-02 22:00:26 SinglePassSamProgram Processed 619,000,000 records. Elapsed time: 00:08:00s. Time for last 1,000,000: 0s. Last read position: chr22:50,220,797
INFO 2026-06-02 22:00:27 SinglePassSamProgram Processed 620,000,000 records. Elapsed time: 00:08:00s. Time for last 1,000,000: 0s. Last read position: chrX:1,392,033
INFO 2026-06-02 22:00:27 SinglePassSamProgram Processed 621,000,000 records. Elapsed time: 00:08:01s. Time for last 1,000,000: 0s. Last read position: chrX:10,459,645
INFO 2026-06-02 22:00:28 SinglePassSamProgram Processed 622,000,000 records. Elapsed time: 00:08:02s. Time for last 1,000,000: 0s. Last read position: chrX:23,671,626
INFO 2026-06-02 22:00:29 SinglePassSamProgram Processed 623,000,000 records. Elapsed time: 00:08:03s. Time for last 1,000,000: 0s. Last read position: chrX:40,597,334
INFO 2026-06-02 22:00:30 SinglePassSamProgram Processed 624,000,000 records. Elapsed time: 00:08:03s. Time for last 1,000,000: 0s. Last read position: chrX:47,179,474
INFO 2026-06-02 22:00:30 SinglePassSamProgram Processed 625,000,000 records. Elapsed time: 00:08:04s. Time for last 1,000,000: 0s. Last read position: chrX:48,576,410
INFO 2026-06-02 22:00:31 SinglePassSamProgram Processed 626,000,000 records. Elapsed time: 00:08:05s. Time for last 1,000,000: 0s. Last read position: chrX:53,193,214
INFO 2026-06-02 22:00:32 SinglePassSamProgram Processed 627,000,000 records. Elapsed time: 00:08:06s. Time for last 1,000,000: 0s. Last read position: chrX:54,815,377
INFO 2026-06-02 22:00:33 SinglePassSamProgram Processed 628,000,000 records. Elapsed time: 00:08:06s. Time for last 1,000,000: 0s. Last read position: chrX:71,107,782
INFO 2026-06-02 22:00:33 SinglePassSamProgram Processed 629,000,000 records. Elapsed time: 00:08:07s. Time for last 1,000,000: 0s. Last read position: chrX:72,351,768
INFO 2026-06-02 22:00:34 SinglePassSamProgram Processed 630,000,000 records. Elapsed time: 00:08:08s. Time for last 1,000,000: 0s. Last read position: chrX:81,202,213
INFO 2026-06-02 22:00:35 SinglePassSamProgram Processed 631,000,000 records. Elapsed time: 00:08:08s. Time for last 1,000,000: 0s. Last read position: chrX:103,676,548
INFO 2026-06-02 22:00:35 SinglePassSamProgram Processed 632,000,000 records. Elapsed time: 00:08:09s. Time for last 1,000,000: 0s. Last read position: chrX:119,574,580
INFO 2026-06-02 22:00:36 SinglePassSamProgram Processed 633,000,000 records. Elapsed time: 00:08:10s. Time for last 1,000,000: 0s. Last read position: chrX:130,067,254
INFO 2026-06-02 22:00:37 SinglePassSamProgram Processed 634,000,000 records. Elapsed time: 00:08:11s. Time for last 1,000,000: 0s. Last read position: chrX:150,727,683
INFO 2026-06-02 22:00:38 SinglePassSamProgram Processed 635,000,000 records. Elapsed time: 00:08:11s. Time for last 1,000,000: 0s. Last read position: chrX:153,952,673
INFO 2026-06-02 22:00:38 SinglePassSamProgram Processed 636,000,000 records. Elapsed time: 00:08:12s. Time for last 1,000,000: 0s. Last read position: chrX:154,353,307
INFO 2026-06-02 22:00:39 SinglePassSamProgram Processed 637,000,000 records. Elapsed time: 00:08:13s. Time for last 1,000,000: 0s. Last read position: chrX:154,362,500
INFO 2026-06-02 22:00:40 SinglePassSamProgram Processed 638,000,000 records. Elapsed time: 00:08:14s. Time for last 1,000,000: 0s. Last read position: chrX:154,432,284
INFO 2026-06-02 22:00:41 SinglePassSamProgram Processed 639,000,000 records. Elapsed time: 00:08:14s. Time for last 1,000,000: 0s. Last read position: chrM:6,995
INFO 2026-06-02 22:00:41 SinglePassSamProgram Processed 640,000,000 records. Elapsed time: 00:08:15s. Time for last 1,000,000: 0s. Last read position: GL000220.1:158,084
INFO 2026-06-02 22:00:42 SinglePassSamProgram Processed 641,000,000 records. Elapsed time: 00:08:16s. Time for last 1,000,000: 0s. Last read position: KI270733.1:132,406
INFO 2026-06-02 22:00:43 SinglePassSamProgram Processed 642,000,000 records. Elapsed time: 00:08:16s. Time for last 1,000,000: 0s. Last read position: KI270733.1:178,746
INFO 2026-06-02 22:00:43 RExecutor Executing R script via command: Rscript /tmp/script13083324188673566416.R /tmp/nxf.XXXXwyHZp4/659_bGW-T1-TRNA-1_B23MHV2LT4_1_collectinsertsize.txt /tmp/nxf.XXXXwyHZp4/659_bGW-T1-TRNA-1_B23MHV2LT4_1_collectinsertsize.pdf 659_bGW-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
ERROR 2026-06-02 22:00:43 ProcessExecutor /bin/sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
ERROR 2026-06-02 22:00:43 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
ERROR 2026-06-02 22:00:43 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
ERROR 2026-06-02 22:00:43 ProcessExecutor During startup - Warning messages:
ERROR 2026-06-02 22:00:43 ProcessExecutor 1: Setting LC_CTYPE failed, using "C"
ERROR 2026-06-02 22:00:43 ProcessExecutor 2: Setting LC_COLLATE failed, using "C"
ERROR 2026-06-02 22:00:43 ProcessExecutor 3: Setting LC_TIME failed, using "C"
ERROR 2026-06-02 22:00:43 ProcessExecutor 4: Setting LC_MESSAGES failed, using "C"
ERROR 2026-06-02 22:00:43 ProcessExecutor 5: Setting LC_MONETARY failed, using "C"
ERROR 2026-06-02 22:00:43 ProcessExecutor 6: Setting LC_PAPER failed, using "C"
ERROR 2026-06-02 22:00:43 ProcessExecutor 7: Setting LC_MEASUREMENT failed, using "C"
INFO 2026-06-02 22:00:43 ProcessExecutor null device
INFO 2026-06-02 22:00:43 ProcessExecutor 1
ERROR 2026-06-02 22:00:43 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
[Tue Jun 02 22:00:43 GMT 2026] picard.analysis.CollectInsertSizeMetrics done. Elapsed time: 8.29 minutes.
Runtime.totalMemory()=377487360